Atomistry » Magnesium » PDB 3kk2-3ktq » 3kkn
Atomistry »
  Magnesium »
    PDB 3kk2-3ktq »
      3kkn »

Magnesium in PDB 3kkn: Crystal Structure of H-Ras T35S in Complex with Gppnhp

Protein crystallography data

The structure of Crystal Structure of H-Ras T35S in Complex with Gppnhp, PDB code: 3kkn was solved by S.Muraoka, F.Shima, J.Liao, Y.Ijiri, K.Matsumoto, M.Ye, T.Inoue, T.Kataoka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.67 / 2.09
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 34.583, 82.000, 121.998, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 24.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of H-Ras T35S in Complex with Gppnhp (pdb code 3kkn). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of H-Ras T35S in Complex with Gppnhp, PDB code: 3kkn:

Magnesium binding site 1 out of 1 in 3kkn

Go back to Magnesium Binding Sites List in 3kkn
Magnesium binding site 1 out of 1 in the Crystal Structure of H-Ras T35S in Complex with Gppnhp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of H-Ras T35S in Complex with Gppnhp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg168

b:12.5
occ:1.00
O2G A:GNP167 1.8 14.7 1.0
O A:HOH1001 2.0 16.7 1.0
O A:HOH1003 2.1 14.0 1.0
O2B A:GNP167 2.1 9.2 1.0
OG A:SER17 2.2 8.4 1.0
O A:HOH1002 2.2 15.7 1.0
PG A:GNP167 3.1 16.4 1.0
PB A:GNP167 3.3 12.3 1.0
CB A:SER17 3.3 8.9 1.0
N3B A:GNP167 3.4 12.9 1.0
N A:SER17 4.0 8.6 1.0
OD2 A:ASP57 4.0 17.2 1.0
O3G A:GNP167 4.1 15.0 1.0
OD1 A:ASP57 4.1 16.3 1.0
O1A A:GNP167 4.2 11.9 1.0
CA A:SER17 4.2 8.9 1.0
O1G A:GNP167 4.2 15.9 1.0
O1B A:GNP167 4.3 11.3 1.0
O3A A:GNP167 4.3 10.8 1.0
O A:PRO34 4.4 34.2 1.0
CG A:ASP57 4.5 15.7 1.0
PA A:GNP167 4.6 12.6 1.0
CE A:LYS16 4.8 9.0 1.0
O A:THR58 4.8 18.1 1.0
O2A A:GNP167 4.9 12.4 1.0
CB A:LYS16 4.9 7.9 1.0
NZ A:LYS16 5.0 8.7 1.0

Reference:

F.Shima, Y.Ijiri, S.Muraoka, J.Liao, M.Ye, M.Araki, K.Matsumoto, N.Yamamoto, T.Sugimoto, Y.Yoshikawa, T.Kumasaka, M.Yamamoto, A.Tamura, T.Kataoka. Structural Basis For Conformational Dynamics of Gtp-Bound Ras Protein J.Biol.Chem. V. 285 22696 2010.
ISSN: ISSN 0021-9258
PubMed: 20479006
DOI: 10.1074/JBC.M110.125161
Page generated: Mon Dec 14 08:22:39 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy