Magnesium in PDB 3kzq: The Crystal Structure of the Protein with Unknown Function From Vibrio Parahaemolyticus Rimd 2210633

The structure of The Crystal Structure of the Protein with Unknown Function From Vibrio Parahaemolyticus Rimd 2210633, PDB code: 3kzq was solved by R.Zhang, A.Weger, G.Shackelford, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.78 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	86.304, 118.108, 206.674, 90.00, 90.00, 90.00
R / Rfree (%)	17.9 / 21.8

The binding sites of Magnesium atom in the The Crystal Structure of the Protein with Unknown Function From Vibrio Parahaemolyticus Rimd 2210633 (pdb code 3kzq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the The Crystal Structure of the Protein with Unknown Function From Vibrio Parahaemolyticus Rimd 2210633, PDB code: 3kzq:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the The Crystal Structure of the Protein with Unknown Function From Vibrio Parahaemolyticus Rimd 2210633


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of the Protein with Unknown Function From Vibrio Parahaemolyticus Rimd 2210633 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg209 b:33.6 occ:1.00 N B:LYS73 3.0 12.0 1.0 CE B:LYS73 3.3 26.8 1.0 CB B:LYS73 3.5 13.1 1.0 CG B:LYS73 3.6 13.8 1.0 CZ2 B:TRP17 3.7 10.2 1.0 CA B:LYS73 3.8 12.7 1.0 CA B:THR72 3.8 10.7 1.0 C B:THR72 3.9 11.3 1.0 CG2 B:THR72 4.0 8.4 1.0 CD B:LYS73 4.0 19.6 1.0 CH2 B:TRP17 4.0 7.5 1.0 MG B:MG210 4.2 31.0 1.0 CE2 B:TRP17 4.3 10.8 1.0 O B:LYS73 4.4 13.3 1.0 CB B:THR72 4.5 10.8 1.0 NZ B:LYS73 4.6 32.3 1.0 C B:LYS73 4.6 12.4 1.0 NE1 B:TRP17 4.7 11.7 1.0 CZ3 B:TRP17 4.8 11.2 1.0 O B:GLY71 4.8 11.5 1.0 N B:THR72 5.0 11.2 1.0

Magnesium binding site 2 out of 4 in the The Crystal Structure of the Protein with Unknown Function From Vibrio Parahaemolyticus Rimd 2210633


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of the Protein with Unknown Function From Vibrio Parahaemolyticus Rimd 2210633 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg210 b:31.0 occ:1.00 O B:GLY18 2.8 9.6 1.0 OG1 B:THR72 2.8 13.0 1.0 O B:HOH292 2.8 30.3 1.0 C B:GLY18 3.5 10.9 1.0 CA B:GLY18 3.6 9.7 1.0 CD B:PRO21 3.6 11.4 1.0 CB B:THR72 3.6 10.8 1.0 CG B:PRO21 3.7 14.4 1.0 CA B:THR72 3.8 10.7 1.0 CG2 B:THR72 3.9 8.4 1.0 O B:TRP17 3.9 7.0 1.0 O B:HOH288 4.0 27.7 1.0 MG B:MG209 4.2 33.6 1.0 N B:THR72 4.2 11.2 1.0 O B:LEU70 4.5 16.3 1.0 N B:GLY18 4.6 9.8 1.0 C B:TRP17 4.6 9.5 1.0 CB B:LEU70 4.6 13.2 1.0 N B:TYR19 4.7 11.6 1.0 CD1 B:LEU70 5.0 13.5 1.0 N B:PRO21 5.0 13.6 1.0 C B:GLY71 5.0 13.1 1.0

Magnesium binding site 3 out of 4 in the The Crystal Structure of the Protein with Unknown Function From Vibrio Parahaemolyticus Rimd 2210633


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Crystal Structure of the Protein with Unknown Function From Vibrio Parahaemolyticus Rimd 2210633 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg211 b:34.1 occ:1.00 O B:TYR181 2.7 9.8 1.0 O E:HOH1049 2.7 19.6 1.0 O2 E:PG6210 2.7 23.0 1.0 C3 E:PG6210 3.0 39.5 1.0 CE1 B:PHE182 3.4 13.2 1.0 CG E:PRO52 3.4 12.9 1.0 CZ B:PHE182 3.5 11.2 1.0 N B:TYR181 3.6 11.0 1.0 CB E:PRO52 3.6 11.3 1.0 CB B:ALA180 3.7 14.2 1.0 C8 E:PG6210 3.7 49.2 1.0 C B:TYR181 3.7 10.8 1.0 C7 E:PG6210 3.8 35.3 1.0 CD1 B:PHE182 3.9 8.3 1.0 CE2 B:PHE182 4.0 12.1 1.0 C4 E:PG6210 4.0 38.4 1.0 O4 E:PG6210 4.1 50.7 1.0 C B:ALA180 4.3 12.3 1.0 O E:HOH1072 4.3 39.2 1.0 CA B:ALA180 4.3 13.2 1.0 CG B:PHE182 4.3 12.0 1.0 CD2 B:PHE182 4.3 11.4 1.0 CA B:TYR181 4.3 9.5 1.0 C2 E:PG6210 4.5 25.8 1.0 C5 E:PG6210 4.5 36.0 1.0 CD E:PRO52 4.5 10.8 1.0 N B:PHE182 4.7 8.9 1.0 C6 E:PG6210 4.8 44.1 1.0 O E:HOH242 4.9 25.2 1.0 O3 E:PG6210 4.9 37.0 1.0

Magnesium binding site 4 out of 4 in the The Crystal Structure of the Protein with Unknown Function From Vibrio Parahaemolyticus Rimd 2210633


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Crystal Structure of the Protein with Unknown Function From Vibrio Parahaemolyticus Rimd 2210633 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg212 b:34.8 occ:1.00 CB E:MET55 3.3 11.8 1.0 CG E:MET55 3.6 18.3 1.0 CG E:MET51 3.7 11.8 1.0 CD E:ARG86 3.8 23.7 1.0 CB E:ARG86 3.9 12.7 1.0 C6 E:PG6210 4.0 44.1 1.0 SD E:MET51 4.3 6.5 1.0 CE E:MET51 4.4 13.2 1.0 O3 E:PG6210 4.4 37.0 1.0 SD E:MET55 4.4 18.1 1.0 CG E:ARG86 4.4 11.8 1.0 CB E:MET51 4.7 9.9 1.0 O E:HOH261 4.7 28.8 1.0 NE E:ARG86 4.8 28.9 1.0 CD E:PRO52 4.8 10.8 1.0 CA E:MET55 4.8 13.2 1.0 O E:HOH227 4.8 9.8 1.0 C5 E:PG6210 4.9 36.0 1.0 O B:HOH251 4.9 29.3 1.0 CA E:MET51 5.0 11.0 1.0

R.Zhang, A.Weger, G.Shackelford, A.Joachimiak. The Crystal Structure of the Protein with Unknown Function From Vibrio Parahaemolyticus Rimd 2210633 To Be Published.