Magnesium in PDB 3l0u: The Crystal Structure of Unmodified Trnaphe From Escherichia Coli

The structure of The Crystal Structure of Unmodified Trnaphe From Escherichia Coli, PDB code: 3l0u was solved by R.T.Byrne, A.L.Konevega, M.V.Rodnina, A.A.Antson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.12 / 3.00
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	99.450, 99.450, 110.330, 90.00, 90.00, 120.00
R / Rfree (%)	22.6 / 26.1

The structure of The Crystal Structure of Unmodified Trnaphe From Escherichia Coli also contains other interesting chemical elements:

Potassium

(K)

1 atom

The binding sites of Magnesium atom in the The Crystal Structure of Unmodified Trnaphe From Escherichia Coli (pdb code 3l0u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of Unmodified Trnaphe From Escherichia Coli, PDB code: 3l0u:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Crystal Structure of Unmodified Trnaphe From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Unmodified Trnaphe From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg77 b:70.9 occ:1.00 O A:HOH85 2.1 28.0 0.0 O A:HOH81 2.2 71.1 1.0 O A:HOH82 2.2 71.0 1.0 O A:HOH83 2.2 71.3 1.0 O A:HOH80 2.2 71.1 1.0 O A:HOH84 2.2 71.0 1.0 OP2 A:U12 3.6 72.1 1.0 OP2 A:C11 3.8 71.6 1.0 OP1 A:U8 3.9 67.7 1.0 OP1 A:A9 4.1 69.4 1.0 OP2 A:U8 4.2 67.2 1.0 OP2 A:A9 4.3 68.5 1.0 P A:C11 4.5 71.8 1.0 P A:U8 4.5 67.5 1.0 O5' A:C11 4.6 71.7 1.0 OP1 A:C11 4.7 72.2 1.0 P A:A9 4.8 68.9 1.0 C5 A:U12 4.8 74.2 1.0

Magnesium binding site 2 out of 2 in the The Crystal Structure of Unmodified Trnaphe From Escherichia Coli


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of Unmodified Trnaphe From Escherichia Coli within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg78 b:72.8 occ:1.00 OP2 A:A14 2.5 74.9 1.0 OP1 A:A7 2.9 70.3 1.0 O3' A:G6 3.3 69.8 1.0 P A:A14 3.4 75.9 1.0 OP1 A:A14 3.6 76.8 1.0 P A:A7 3.7 70.2 1.0 O3' A:C13 3.8 75.2 1.0 C3' A:C13 4.2 74.5 1.0 C3' A:G6 4.6 69.9 1.0 C5' A:C13 4.6 73.8 1.0 O4 A:U8 4.6 70.3 1.0 C4' A:G6 4.7 70.2 1.0 C5' A:A7 4.7 68.1 1.0 O5' A:A7 4.8 69.3 1.0 OP2 A:A7 4.8 71.0 1.0 O5' A:A14 4.8 76.7 1.0 O2' A:G6 4.9 68.9 1.0 C5 A:U8 5.0 69.4 1.0 C4' A:C13 5.0 74.3 1.0

R.T.Byrne, A.L.Konevega, M.V.Rodnina, A.A.Antson. The Crystal Structure of Unmodified Trnaphe From Escherichia Coli Nucleic Acids Res. V. 38 4154 2010.
ISSN: ISSN 0305-1048
PubMed: 20203084
DOI: 10.1093/NAR/GKQ133