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Magnesium in PDB 3l25: Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain Bound to 8 Bp Dsrna

Protein crystallography data

The structure of Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain Bound to 8 Bp Dsrna, PDB code: 3l25 was solved by D.W.Leung, K.C.Prins, D.M.Borek, M.Farahbakhsh, J.M.Tufariello, P.Ramanan, J.C.Nix, L.A.Helgeson, Z.Otwinowski, R.B.Honzatko, C.F.Basler, G.K.Amarasinghe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.68 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.947, 84.571, 89.316, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 20.7

Other elements in 3l25:

The structure of Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain Bound to 8 Bp Dsrna also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Sodium (Na) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain Bound to 8 Bp Dsrna (pdb code 3l25). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain Bound to 8 Bp Dsrna, PDB code: 3l25:

Magnesium binding site 1 out of 1 in 3l25

Go back to Magnesium Binding Sites List in 3l25
Magnesium binding site 1 out of 1 in the Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain Bound to 8 Bp Dsrna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Zaire Ebola VP35 Interferon Inhibitory Domain Bound to 8 Bp Dsrna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1

b:50.3
occ:1.00
O1 A:FMT12 2.2 37.6 1.0
O2 A:FMT11 2.6 52.1 1.0
C A:FMT11 3.3 52.3 1.0
C A:FMT12 3.4 38.0 1.0
CB A:PRO304 3.5 15.8 1.0
CG A:PRO304 3.6 14.5 1.0
CA A:GLY236 3.6 10.0 1.0
CB A:HIS240 3.8 9.3 1.0
N A:GLY236 4.3 10.3 1.0
O1 A:FMT11 4.4 52.5 1.0
O2 A:FMT12 4.4 38.1 1.0
C A:GLY236 4.5 8.5 1.0
N A:GLN241 4.5 9.6 1.0
C A:HIS240 4.5 9.9 1.0
CA A:PRO304 4.6 16.1 1.0
O A:HOH57 4.7 20.1 1.0
CG A:HIS240 4.8 9.2 1.0
O A:HIS240 4.8 10.2 1.0
CA A:HIS240 4.9 8.7 1.0
O A:THR237 4.9 7.7 1.0
O A:GLY236 5.0 9.4 1.0
CA A:GLN241 5.0 11.1 1.0

Reference:

D.W.Leung, K.C.Prins, D.M.Borek, M.Farahbakhsh, J.M.Tufariello, P.Ramanan, J.C.Nix, L.A.Helgeson, Z.Otwinowski, R.B.Honzatko, C.F.Basler, G.K.Amarasinghe. Structural Basis For Dsrna Recognition and Interferon Antagonism By Ebola VP35. Nat.Struct.Mol.Biol. V. 17 165 2010.
ISSN: ISSN 1545-9993
PubMed: 20081868
DOI: 10.1038/NSMB.1765
Page generated: Mon Dec 14 08:23:39 2020

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