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Magnesium in PDB 3l8f: Crystal Structure of D,D-Heptose 1.7-Bisphosphate Phosphatase From E. Coli Complexed with Magnesium and Phosphate

Protein crystallography data

The structure of Crystal Structure of D,D-Heptose 1.7-Bisphosphate Phosphatase From E. Coli Complexed with Magnesium and Phosphate, PDB code: 3l8f was solved by H.Nguyen, E.Peisach, K.N.Allen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.79
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 64.476, 50.002, 51.884, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 23.5

Other elements in 3l8f:

The structure of Crystal Structure of D,D-Heptose 1.7-Bisphosphate Phosphatase From E. Coli Complexed with Magnesium and Phosphate also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of D,D-Heptose 1.7-Bisphosphate Phosphatase From E. Coli Complexed with Magnesium and Phosphate (pdb code 3l8f). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of D,D-Heptose 1.7-Bisphosphate Phosphatase From E. Coli Complexed with Magnesium and Phosphate, PDB code: 3l8f:

Magnesium binding site 1 out of 1 in 3l8f

Go back to Magnesium Binding Sites List in 3l8f
Magnesium binding site 1 out of 1 in the Crystal Structure of D,D-Heptose 1.7-Bisphosphate Phosphatase From E. Coli Complexed with Magnesium and Phosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of D,D-Heptose 1.7-Bisphosphate Phosphatase From E. Coli Complexed with Magnesium and Phosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:35.2
occ:1.00
O2 A:PO4601 2.1 41.5 1.0
OD2 A:ASP11 2.2 53.6 1.0
O A:ASP13 2.3 25.1 1.0
OD1 A:ASP136 2.4 27.4 1.0
NZ A:LYS137 2.4 33.8 1.0
O A:HOH291 2.4 41.2 1.0
CG A:ASP11 3.0 45.1 1.0
OD1 A:ASP11 3.2 47.7 1.0
CG A:ASP136 3.3 31.3 1.0
OD2 A:ASP136 3.5 30.6 1.0
C A:ASP13 3.5 26.5 1.0
P A:PO4601 3.5 46.4 1.0
CE A:LYS137 3.8 33.1 1.0
O3 A:PO4601 4.1 31.6 1.0
O A:HOH207 4.1 32.4 1.0
O1 A:PO4601 4.3 32.8 1.0
CB A:ASP11 4.4 34.7 1.0
OD2 A:ASP140 4.4 22.0 1.0
O4 A:PO4601 4.4 43.6 1.0
CD A:LYS137 4.4 33.1 1.0
N A:GLY14 4.4 25.2 1.0
CA A:ASP13 4.4 25.5 1.0
CA A:GLY14 4.4 25.2 1.0
CG A:LYS137 4.4 32.8 1.0
CB A:ASP13 4.5 28.1 1.0
N A:ASP13 4.5 22.6 1.0
N A:ASP136 4.5 21.6 1.0
CB A:ASP136 4.6 23.1 1.0
OG1 A:THR15 4.9 28.6 1.0
C A:GLY14 5.0 26.2 1.0

Reference:

H.H.Nguyen, L.Wang, H.Huang, E.Peisach, D.Dunaway-Mariano, K.N.Allen. Structural Determinants of Substrate Recognition in the Had Superfamily Member D-Glycero-D-Manno-Heptose-1,7-Bisphosphate Phosphatase (Gmhb) . Biochemistry V. 49 1082 2010.
ISSN: ISSN 0006-2960
PubMed: 20050614
DOI: 10.1021/BI902019Q
Page generated: Mon Dec 14 08:23:49 2020

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