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Magnesium in PDB 3lac: Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp

Enzymatic activity of Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp

All present enzymatic activity of Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp:
3.4.19.3;

Protein crystallography data

The structure of Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp, PDB code: 3lac was solved by S.M.Anderson, Z.Wawrzak, O.Onopriyenko, J.Hasseman, A.Edwards, A.Savchenko, W.F.Anderson, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.30 / 2.00
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 78.550, 78.550, 141.040, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 22.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp (pdb code 3lac). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp, PDB code: 3lac:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3lac

Go back to Magnesium Binding Sites List in 3lac
Magnesium binding site 1 out of 2 in the Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg216

b:27.9
occ:1.00
O B:HOH377 2.6 29.5 1.0
N B:VAL134 3.0 5.7 1.0
O B:HOH323 3.1 22.1 1.0
CA B:SER133 3.5 5.2 1.0
CB B:SER133 3.7 4.8 1.0
C B:SER133 3.7 5.9 1.0
CG2 B:VAL134 4.0 5.5 1.0
CB B:VAL134 4.0 5.9 1.0
CA B:VAL134 4.1 7.0 1.0
O B:HOH268 4.2 45.2 1.0
CG1 B:VAL122 4.3 8.0 1.0
O B:VAL134 4.4 5.2 1.0
O A:HOH229 4.7 33.6 1.0
C B:VAL134 4.7 6.6 1.0
N B:SER133 4.8 3.6 1.0
O B:ALA132 4.8 4.9 1.0
O B:SER133 4.9 5.1 1.0
CG2 B:VAL122 4.9 2.7 1.0
OG B:SER133 4.9 6.6 1.0
O B:HOH373 5.0 43.3 1.0
O A:HOH312 5.0 28.8 1.0

Magnesium binding site 2 out of 2 in 3lac

Go back to Magnesium Binding Sites List in 3lac
Magnesium binding site 2 out of 2 in the Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg217

b:24.9
occ:1.00
O B:PRO75 2.7 10.6 1.0
O B:SER183 2.7 5.4 1.0
C B:PRO75 3.5 8.5 1.0
CA B:PRO75 3.6 6.9 1.0
N B:SER183 3.6 8.6 1.0
CB B:PRO182 3.7 4.2 1.0
C B:SER183 3.8 5.4 1.0
CB B:PRO75 4.0 7.3 1.0
CA B:SER183 4.3 4.7 1.0
C B:PRO182 4.4 6.5 1.0
CA B:PRO182 4.4 5.3 1.0
N B:ASP76 4.8 8.3 1.0
N B:MSE184 4.8 5.6 1.0
CG B:PRO182 4.9 7.4 1.0

Reference:

S.M.Anderson, Z.Wawrzak, O.Onopriyenko, J.Hasseman, A.Edwards, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp To Be Published.
Page generated: Mon Dec 14 08:23:59 2020

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