Atomistry » Magnesium » PDB 3l9b-3lop » 3lac
Atomistry »
  Magnesium »
    PDB 3l9b-3lop »
      3lac »

Magnesium in PDB 3lac: Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp

Enzymatic activity of Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp

All present enzymatic activity of Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp:
3.4.19.3;

Protein crystallography data

The structure of Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp, PDB code: 3lac was solved by S.M.Anderson, Z.Wawrzak, O.Onopriyenko, J.Hasseman, A.Edwards, A.Savchenko, W.F.Anderson, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.30 / 2.00
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 78.550, 78.550, 141.040, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 22.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp (pdb code 3lac). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp, PDB code: 3lac:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3lac

Go back to Magnesium Binding Sites List in 3lac
Magnesium binding site 1 out of 2 in the Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg216

b:27.9
occ:1.00
O B:HOH377 2.6 29.5 1.0
N B:VAL134 3.0 5.7 1.0
O B:HOH323 3.1 22.1 1.0
CA B:SER133 3.5 5.2 1.0
CB B:SER133 3.7 4.8 1.0
C B:SER133 3.7 5.9 1.0
CG2 B:VAL134 4.0 5.5 1.0
CB B:VAL134 4.0 5.9 1.0
CA B:VAL134 4.1 7.0 1.0
O B:HOH268 4.2 45.2 1.0
CG1 B:VAL122 4.3 8.0 1.0
O B:VAL134 4.4 5.2 1.0
O A:HOH229 4.7 33.6 1.0
C B:VAL134 4.7 6.6 1.0
N B:SER133 4.8 3.6 1.0
O B:ALA132 4.8 4.9 1.0
O B:SER133 4.9 5.1 1.0
CG2 B:VAL122 4.9 2.7 1.0
OG B:SER133 4.9 6.6 1.0
O B:HOH373 5.0 43.3 1.0
O A:HOH312 5.0 28.8 1.0

Magnesium binding site 2 out of 2 in 3lac

Go back to Magnesium Binding Sites List in 3lac
Magnesium binding site 2 out of 2 in the Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg217

b:24.9
occ:1.00
O B:PRO75 2.7 10.6 1.0
O B:SER183 2.7 5.4 1.0
C B:PRO75 3.5 8.5 1.0
CA B:PRO75 3.6 6.9 1.0
N B:SER183 3.6 8.6 1.0
CB B:PRO182 3.7 4.2 1.0
C B:SER183 3.8 5.4 1.0
CB B:PRO75 4.0 7.3 1.0
CA B:SER183 4.3 4.7 1.0
C B:PRO182 4.4 6.5 1.0
CA B:PRO182 4.4 5.3 1.0
N B:ASP76 4.8 8.3 1.0
N B:MSE184 4.8 5.6 1.0
CG B:PRO182 4.9 7.4 1.0

Reference:

S.M.Anderson, Z.Wawrzak, O.Onopriyenko, J.Hasseman, A.Edwards, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Bacillus Anthracis Pyrrolidone-Carboxylate Peptidase, Pcp To Be Published.
Page generated: Wed Aug 14 18:29:08 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy