Atomistry » Magnesium » PDB 3l9b-3lop » 3lbi
Atomistry »
  Magnesium »
    PDB 3l9b-3lop »
      3lbi »

Magnesium in PDB 3lbi: Ras Soaked in Magnesium Acetate and Back Soaked in Calcium Acetate

Protein crystallography data

The structure of Ras Soaked in Magnesium Acetate and Back Soaked in Calcium Acetate, PDB code: 3lbi was solved by G.Holzapfel, G.Buhrman, C.Mattos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.40 / 2.09
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 88.716, 88.716, 134.583, 90.00, 90.00, 120.00
R / Rfree (%) 17.5 / 21.7

Other elements in 3lbi:

The structure of Ras Soaked in Magnesium Acetate and Back Soaked in Calcium Acetate also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Ras Soaked in Magnesium Acetate and Back Soaked in Calcium Acetate (pdb code 3lbi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Ras Soaked in Magnesium Acetate and Back Soaked in Calcium Acetate, PDB code: 3lbi:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3lbi

Go back to Magnesium Binding Sites List in 3lbi
Magnesium binding site 1 out of 2 in the Ras Soaked in Magnesium Acetate and Back Soaked in Calcium Acetate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ras Soaked in Magnesium Acetate and Back Soaked in Calcium Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg168

b:25.5
occ:1.00
O2G A:GNP528 2.1 23.4 1.0
OG A:SER17 2.2 22.9 1.0
O2B A:GNP528 2.2 19.0 1.0
O A:HOH203 2.2 22.8 1.0
OG1 A:THR35 2.3 25.8 1.0
O A:HOH202 2.3 20.1 1.0
CB A:SER17 3.1 23.9 1.0
CB A:THR35 3.1 25.0 1.0
PG A:GNP528 3.2 26.7 1.0
PB A:GNP528 3.3 21.4 1.0
N3B A:GNP528 3.3 27.4 1.0
N A:SER17 3.8 21.0 1.0
N A:THR35 3.9 24.7 1.0
CA A:SER17 3.9 22.9 1.0
OD2 A:ASP57 4.0 28.2 1.0
OD1 A:ASP57 4.0 24.1 1.0
O3G A:GNP528 4.1 25.1 1.0
CA A:THR35 4.1 24.3 1.0
O A:HOH234 4.2 24.1 1.0
CG2 A:THR35 4.2 23.2 1.0
O2A A:GNP528 4.2 19.8 1.0
O1B A:GNP528 4.2 24.9 1.0
O3A A:GNP528 4.3 23.5 1.0
CG A:ASP57 4.4 26.6 1.0
O1G A:GNP528 4.4 25.7 1.0
O A:THR58 4.5 23.4 1.0
O A:ASP33 4.5 23.8 1.0
PA A:GNP528 4.5 22.3 1.0
O1A A:GNP528 4.6 22.4 1.0
CB A:LYS16 4.8 20.4 1.0
C A:LYS16 4.8 22.5 1.0
C A:PRO34 4.8 27.5 1.0
NZ A:LYS16 4.9 19.0 1.0
CE A:LYS16 5.0 22.1 1.0

Magnesium binding site 2 out of 2 in 3lbi

Go back to Magnesium Binding Sites List in 3lbi
Magnesium binding site 2 out of 2 in the Ras Soaked in Magnesium Acetate and Back Soaked in Calcium Acetate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ras Soaked in Magnesium Acetate and Back Soaked in Calcium Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg170

b:35.7
occ:0.50
O A:HOH242 2.2 31.4 1.0
O A:HOH253 2.4 31.5 1.0
NE2 A:GLN129 4.2 38.8 1.0
O A:THR124 4.4 26.3 1.0
OE1 A:GLN129 4.4 31.9 1.0
CD A:GLN129 4.7 37.5 1.0

Reference:

G.Buhrman, G.Holzapfel, S.Fetics, C.Mattos. Allosteric Modulation of Ras Positions Q61 For A Direct Role in Catalysis. Proc.Natl.Acad.Sci.Usa V. 107 4931 2010.
ISSN: ISSN 0027-8424
PubMed: 20194776
DOI: 10.1073/PNAS.0912226107
Page generated: Mon Dec 14 08:24:00 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy