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Magnesium in PDB 3lc6: The Alternative Conformation Structure of Isocitrate Dehydrogenase Kinase/Phosphatase From E. Coli

Enzymatic activity of The Alternative Conformation Structure of Isocitrate Dehydrogenase Kinase/Phosphatase From E. Coli

All present enzymatic activity of The Alternative Conformation Structure of Isocitrate Dehydrogenase Kinase/Phosphatase From E. Coli:
2.7.11.5;

Protein crystallography data

The structure of The Alternative Conformation Structure of Isocitrate Dehydrogenase Kinase/Phosphatase From E. Coli, PDB code: 3lc6 was solved by J.Zheng, Z.Jia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 3.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 64.145, 133.757, 187.339, 90.00, 90.00, 90.00
R / Rfree (%) 28.7 / 33.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Alternative Conformation Structure of Isocitrate Dehydrogenase Kinase/Phosphatase From E. Coli (pdb code 3lc6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Alternative Conformation Structure of Isocitrate Dehydrogenase Kinase/Phosphatase From E. Coli, PDB code: 3lc6:

Magnesium binding site 1 out of 1 in 3lc6

Go back to Magnesium Binding Sites List in 3lc6
Magnesium binding site 1 out of 1 in the The Alternative Conformation Structure of Isocitrate Dehydrogenase Kinase/Phosphatase From E. Coli


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Alternative Conformation Structure of Isocitrate Dehydrogenase Kinase/Phosphatase From E. Coli within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg579

b:15.9
occ:1.00
 OD1 A:ASN462 2.2 11.1 1.0
O2B A:ADP1762 2.7 11.9 1.0
O1A A:ADP1762 2.9 12.3 1.0
O3' A:ADP1762 3.2 11.0 1.0
CG A:ASN462 3.4 11.2 1.0
OD2 A:ASP475 3.5 13.7 1.0
O5' A:ADP1762 3.5 10.7 1.0
CE A:LYS461 3.7 6.8 1.0
CG A:LYS461 3.7 9.9 1.0
PB A:ADP1762 3.8 10.9 1.0
PA A:ADP1762 3.9 11.3 1.0
C3' A:ADP1762 3.9 9.2 1.0
O1B A:ADP1762 3.9 11.2 1.0
ND2 A:ASN462 4.1 11.4 1.0
NZ A:LYS461 4.3 4.6 1.0
CD A:LYS461 4.3 8.1 1.0
O3A A:ADP1762 4.4 10.6 1.0
CG A:ASP475 4.4 14.7 1.0
C5' A:ADP1762 4.5 10.8 1.0
CB A:ASN462 4.6 12.2 1.0
O A:LYS461 4.6 9.8 1.0
CA A:ASN462 4.6 12.2 1.0
C4' A:ADP1762 4.6 10.3 1.0
O A:ILE318 4.8 8.4 1.0
C A:LYS461 4.8 10.4 1.0
N A:ASN462 4.9 11.7 1.0
OD1 A:ASP475 5.0 14.3 1.0

Reference:

J.Zheng, Z.Jia. Structure of the Bifunctional Isocitrate Dehydrogenase Kinase/Phosphatase. Nature V. 465 961 2010.
ISSN: ISSN 0028-0836
PubMed: 20505668
DOI: 10.1038/NATURE09088
Page generated: Mon Dec 14 08:24:03 2020

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