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Magnesium in PDB 3ldv: 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961

Enzymatic activity of 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961

All present enzymatic activity of 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961:
4.1.1.23;

Protein crystallography data

The structure of 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961, PDB code: 3ldv was solved by A.S.Halavaty, L.Shuvalova, G.Minasov, I.Dubrovska, J.Winsor, E.M.Glass, S.N.Peterson, W.F.Anderson, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.77
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.300, 94.675, 99.183, 90.00, 90.00, 90.00
R / Rfree (%) 15.4 / 18.5

Other elements in 3ldv:

The structure of 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 (pdb code 3ldv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961, PDB code: 3ldv:

Magnesium binding site 1 out of 1 in 3ldv

Go back to Magnesium Binding Sites List in 3ldv
Magnesium binding site 1 out of 1 in the 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg232

b:43.4
occ:1.00
 OD1 A:ASP26 2.0 38.5 1.0
O A:HOH516 2.1 25.8 1.0
O A:HOH330 2.2 25.9 1.0
O A:HOH487 2.3 21.5 1.0
CG A:ASP26 3.1 34.0 1.0
OD2 A:ASP26 3.5 39.8 1.0
O A:ILE25 4.1 28.2 1.0
C A:ILE25 4.2 27.6 1.0
O A:LYS24 4.4 28.6 1.0
CB A:ASP26 4.4 29.5 1.0
OE1 A:GLU220 4.5 53.3 0.5
N A:ASP26 4.5 26.9 1.0
C A:LYS24 4.7 28.1 1.0
CA A:ASP26 4.7 28.6 1.0
O A:HOH519 4.7 45.8 1.0
O A:ASP23 4.7 31.4 1.0
CA A:ILE25 4.7 27.0 1.0
CD A:GLU220 4.8 48.6 0.5
N A:ILE25 4.8 26.8 1.0
OE2 A:GLU220 5.0 52.7 0.5

Reference:

A.S.Halavaty, L.Shuvalova, G.Minasov, I.Dubrovska, J.Winsor, E.M.Glass, S.N.Peterson, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.77 Angstrom Resolution Crystal Structure of Orotidine 5'-Phosphate Decarboxylase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 To Be Published.
Page generated: Mon Dec 14 08:24:09 2020

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