Magnesium in PDB 3lie: Crystal Structure of the Extracellular Domain of the Putative Histidine Kinase VPHK1S-Z8

The structure of Crystal Structure of the Extracellular Domain of the Putative Histidine Kinase VPHK1S-Z8, PDB code: 3lie was solved by Z.Zhang, W.A.Hendrickson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.03 / 2.59
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.049, 114.953, 69.624, 90.00, 90.00, 90.00
R / Rfree (%)	25.4 / 32.6

The binding sites of Magnesium atom in the Crystal Structure of the Extracellular Domain of the Putative Histidine Kinase VPHK1S-Z8 (pdb code 3lie). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Extracellular Domain of the Putative Histidine Kinase VPHK1S-Z8, PDB code: 3lie:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Extracellular Domain of the Putative Histidine Kinase VPHK1S-Z8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Extracellular Domain of the Putative Histidine Kinase VPHK1S-Z8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2 b:63.1 occ:1.00 O A:TYR208 3.9 42.5 1.0 O A:LEU205 4.0 49.5 1.0 OE2 A:GLU54 4.6 41.7 1.0 OE1 A:GLU54 4.7 44.0 1.0 O B:HOH321 4.7 19.6 1.0 O A:LEU206 4.8 45.8 1.0 CD A:PRO210 4.9 41.5 1.0 C A:TYR208 4.9 42.0 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Extracellular Domain of the Putative Histidine Kinase VPHK1S-Z8


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Extracellular Domain of the Putative Histidine Kinase VPHK1S-Z8 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1 b:55.9 occ:1.00 OE2 B:GLU54 4.4 42.7 1.0 O B:TYR208 4.5 42.7 1.0 O A:HOH321 4.5 24.2 1.0 O B:LEU205 4.6 49.8 1.0 OE1 B:GLU54 5.0 44.3 1.0

Z.Zhang, W.A.Hendrickson. Structural Characterization of the Predominant Family of Histidine Kinase Sensor Domains. J.Mol.Biol. V. 400 335 2010.
ISSN: ISSN 0022-2836
PubMed: 20435045
DOI: 10.1016/J.JMB.2010.04.049