Atomistry » Magnesium » PDB 3l9b-3lop » 3lkm
Atomistry »
  Magnesium »
    PDB 3l9b-3lop »
      3lkm »

Magnesium in PDB 3lkm: 1.6 Angstrom Crystal Structure of the Alpha-Kinase Domain of Myosin Heavy Chain Kinase A Complex with Amp

Enzymatic activity of 1.6 Angstrom Crystal Structure of the Alpha-Kinase Domain of Myosin Heavy Chain Kinase A Complex with Amp

All present enzymatic activity of 1.6 Angstrom Crystal Structure of the Alpha-Kinase Domain of Myosin Heavy Chain Kinase A Complex with Amp:
2.7.11.7;

Protein crystallography data

The structure of 1.6 Angstrom Crystal Structure of the Alpha-Kinase Domain of Myosin Heavy Chain Kinase A Complex with Amp, PDB code: 3lkm was solved by Q.Ye, Z.Jia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.28 / 1.60
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 76.224, 83.777, 44.364, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 22.4

Other elements in 3lkm:

The structure of 1.6 Angstrom Crystal Structure of the Alpha-Kinase Domain of Myosin Heavy Chain Kinase A Complex with Amp also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the 1.6 Angstrom Crystal Structure of the Alpha-Kinase Domain of Myosin Heavy Chain Kinase A Complex with Amp (pdb code 3lkm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the 1.6 Angstrom Crystal Structure of the Alpha-Kinase Domain of Myosin Heavy Chain Kinase A Complex with Amp, PDB code: 3lkm:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 3lkm

Go back to Magnesium Binding Sites List in 3lkm
Magnesium binding site 1 out of 3 in the 1.6 Angstrom Crystal Structure of the Alpha-Kinase Domain of Myosin Heavy Chain Kinase A Complex with Amp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 1.6 Angstrom Crystal Structure of the Alpha-Kinase Domain of Myosin Heavy Chain Kinase A Complex with Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg901

b:24.1
occ:1.00
 O1P A:AMP907 2.7 14.6 1.0
O A:HOH115 2.7 27.3 1.0
OE1 A:GLN758 2.7 10.5 1.0
O3' A:AMP907 2.7 13.4 1.0
C3' A:AMP907 3.3 12.0 1.0
CD A:GLN758 3.6 10.1 1.0
NE2 A:GLN758 3.8 11.3 1.0
O A:HOH79 3.9 16.9 1.0
O4 A:PO4906 3.9 17.2 1.0
P A:AMP907 4.0 14.8 1.0
C5' A:AMP907 4.0 13.3 1.0
O5' A:AMP907 4.1 13.8 1.0
C4' A:AMP907 4.2 12.2 1.0
CE2 A:PHE720 4.2 11.3 1.0
O A:HOH86 4.3 19.9 1.0
CZ A:PHE720 4.4 9.9 1.0
C2' A:AMP907 4.6 11.3 1.0
NZ A:LYS722 4.7 22.4 1.0
O2P A:AMP907 4.7 15.6 1.0
CA A:GLY589 4.8 15.6 1.0
O A:HOH133 4.9 18.9 1.0
CG A:GLN758 4.9 8.7 1.0
OD2 A:ASP766 5.0 14.0 1.0

Magnesium binding site 2 out of 3 in 3lkm

Go back to Magnesium Binding Sites List in 3lkm
Magnesium binding site 2 out of 3 in the 1.6 Angstrom Crystal Structure of the Alpha-Kinase Domain of Myosin Heavy Chain Kinase A Complex with Amp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 1.6 Angstrom Crystal Structure of the Alpha-Kinase Domain of Myosin Heavy Chain Kinase A Complex with Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg902

b:8.0
occ:1.00
 OD1 A:ASP766 2.6 12.0 1.0
O A:HOH100 2.7 20.9 1.0
O A:HOH38 2.8 11.5 1.0
O A:PRO767 2.8 7.7 1.0
OE1 A:GLN768 2.8 9.9 1.0
O A:HOH117 2.9 21.7 1.0
CG A:ASP766 3.6 10.6 1.0
CE A:MET666 3.6 10.9 1.0
C A:PRO767 3.8 7.4 1.0
CD A:GLN768 3.9 8.7 1.0
O A:HOH27 4.0 17.1 1.0
O A:ASP766 4.0 7.8 1.0
OD2 A:ASP766 4.1 14.0 1.0
CB A:GLN768 4.1 7.6 1.0
CA A:GLN768 4.2 7.3 1.0
O A:HOH93 4.3 27.7 1.0
C A:ASP766 4.3 7.7 1.0
O A:HOH152 4.3 22.0 1.0
N A:GLN768 4.4 7.1 1.0
O1 A:PO4906 4.4 18.8 1.0
CG A:GLN768 4.6 8.2 1.0
CA A:ASP766 4.7 8.3 1.0
CB A:ASP766 4.8 9.1 1.0
N A:PRO767 4.8 7.6 1.0
NE2 A:GLN768 4.8 9.8 1.0
OD2 A:ASP756 4.9 14.0 1.0
CA A:PRO767 4.9 7.7 1.0
SD A:MET666 4.9 9.9 1.0

Magnesium binding site 3 out of 3 in 3lkm

Go back to Magnesium Binding Sites List in 3lkm
Magnesium binding site 3 out of 3 in the 1.6 Angstrom Crystal Structure of the Alpha-Kinase Domain of Myosin Heavy Chain Kinase A Complex with Amp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of 1.6 Angstrom Crystal Structure of the Alpha-Kinase Domain of Myosin Heavy Chain Kinase A Complex with Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg903

b:10.5
occ:1.00
 O A:GLY778 2.7 11.8 1.0
O A:HOH82 2.8 22.4 1.0
O A:HOH50 2.8 18.5 1.0
O A:GLY776 2.8 12.2 1.0
O A:HOH273 2.9 35.9 1.0
O A:GLY774 3.0 15.4 1.0
N A:GLY776 3.6 14.5 1.0
O A:HOH134 3.6 27.4 1.0
C A:GLY776 3.6 12.8 1.0
C A:GLY778 3.7 11.8 1.0
O A:HOH45 3.8 14.9 1.0
CB A:ASN781 3.9 9.0 1.0
CA A:GLY776 4.0 13.4 1.0
C A:LYS775 4.1 14.9 1.0
N A:GLY778 4.1 11.6 1.0
C A:GLY774 4.1 15.3 1.0
CA A:LYS775 4.4 15.7 1.0
CA A:GLY778 4.4 11.8 1.0
ND2 A:ASN781 4.5 9.3 1.0
OE2 A:GLU662 4.5 17.9 1.0
C A:PHE777 4.6 11.6 1.0
CG A:ASN781 4.6 8.6 1.0
O A:ASN781 4.6 9.3 1.0
N A:PHE777 4.7 11.8 1.0
N A:LEU779 4.7 11.5 1.0
N A:LYS775 4.7 15.3 1.0
O A:LYS775 4.8 14.9 1.0
CA A:LEU779 4.9 11.3 1.0
N A:ASN781 4.9 8.6 1.0
CA A:ASN781 4.9 8.8 1.0
O A:PHE777 5.0 12.0 1.0

Reference:

Q.Ye, S.W.Crawley, Y.Yang, G.P.Cote, Z.Jia. Crystal Structure of the {Alpha}-Kinase Domain of Dictyostelium Myosin Heavy Chain Kinase A. Sci.Signal. V. 3 RA17 2010.
ISSN: ESSN 1937-9145
PubMed: 20197546
DOI: 10.1126/SCISIGNAL.2000525
Page generated: Wed Aug 14 18:34:00 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy