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Magnesium in PDB 3lrp: Crystal Structure of Plasmodium Falciparum Adp-Ribosylation Factor 1

Protein crystallography data

The structure of Crystal Structure of Plasmodium Falciparum Adp-Ribosylation Factor 1, PDB code: 3lrp was solved by W.J.Cook, D.Chattopadhyay, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.12 / 2.50
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 45.732, 147.280, 64.229, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 25.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Plasmodium Falciparum Adp-Ribosylation Factor 1 (pdb code 3lrp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Plasmodium Falciparum Adp-Ribosylation Factor 1, PDB code: 3lrp:

Magnesium binding site 1 out of 1 in 3lrp

Go back to Magnesium Binding Sites List in 3lrp
Magnesium binding site 1 out of 1 in the Crystal Structure of Plasmodium Falciparum Adp-Ribosylation Factor 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Plasmodium Falciparum Adp-Ribosylation Factor 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg183

b:15.5
occ:1.00
O A:HOH282 1.9 9.1 1.0
O2B A:GDP182 2.1 22.6 1.0
O A:HOH290 2.2 12.6 1.0
OG1 A:THR31 2.3 20.4 1.0
O A:HOH289 2.3 9.5 1.0
PB A:GDP182 3.3 20.3 1.0
O3B A:GDP182 3.3 24.5 1.0
CB A:THR31 3.4 20.5 1.0
OD1 A:ASP67 4.0 18.4 1.0
O3A A:GDP182 4.1 25.4 1.0
OE2 A:GLU54 4.1 25.9 1.0
N A:THR31 4.1 17.3 1.0
OE1 A:GLU54 4.1 28.4 1.0
OD2 A:ASP67 4.3 16.4 1.0
CA A:THR31 4.3 18.8 1.0
O2A A:GDP182 4.3 28.6 1.0
CD A:GLU54 4.4 23.3 1.0
O1B A:GDP182 4.5 23.4 1.0
CG2 A:THR31 4.5 20.4 1.0
PA A:GDP182 4.5 28.3 1.0
CG A:ASP67 4.6 15.9 1.0
O A:HOH222 4.8 29.2 1.0
CE A:LYS30 4.9 13.4 1.0
CB A:LYS30 4.9 10.9 1.0
NZ A:LYS30 5.0 14.6 1.0

Reference:

W.J.Cook, C.D.Smith, O.Senkovich, A.A.Holder, D.Chattopadhyay. Structure of Plasmodium Falciparum Adp-Ribosylation Factor 1. Acta Crystallogr.,Sect.F V. 66 1426 2010.
ISSN: ESSN 1744-3091
PubMed: 21045287
DOI: 10.1107/S1744309110036997
Page generated: Wed Aug 14 18:38:32 2024

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