Atomistry » Magnesium » PDB 3lpl-3m1i » 3ls6
Atomistry »
  Magnesium »
    PDB 3lpl-3m1i »
      3ls6 »

Magnesium in PDB 3ls6: Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase in Complex with Sulfate and Zinc

Enzymatic activity of Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase in Complex with Sulfate and Zinc

All present enzymatic activity of Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase in Complex with Sulfate and Zinc:
4.1.99.12;

Protein crystallography data

The structure of Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase in Complex with Sulfate and Zinc, PDB code: 3ls6 was solved by P.Kumar, S.Karthikeyan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.86
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 66.276, 77.161, 146.827, 90.00, 90.00, 90.00
R / Rfree (%) 15.9 / 19.7

Other elements in 3ls6:

The structure of Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase in Complex with Sulfate and Zinc also contains other interesting chemical elements:

Zinc (Zn) 11 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase in Complex with Sulfate and Zinc (pdb code 3ls6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase in Complex with Sulfate and Zinc, PDB code: 3ls6:

Magnesium binding site 1 out of 1 in 3ls6

Go back to Magnesium Binding Sites List in 3ls6
Magnesium binding site 1 out of 1 in the Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase in Complex with Sulfate and Zinc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase in Complex with Sulfate and Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg312

b:18.6
occ:1.00
 O A:HOH610 1.9 15.2 1.0
OE2 A:GLU38 1.9 23.8 1.0
O A:HOH612 2.0 27.5 1.0
O B:HOH611 2.1 33.4 1.0
O B:HOH618 2.3 23.4 1.0
ZN B:ZN310 2.7 17.4 0.5
CD A:GLU38 3.1 20.2 1.0
OE1 A:GLU38 3.7 19.6 1.0
ZN A:ZN303 3.7 20.2 1.0
O A:HOH402 3.9 27.9 1.0
NE2 B:HIS136 3.9 27.4 1.0
OE1 A:GLU40 4.0 19.0 1.0
O A:HOH400 4.0 18.8 1.0
O A:HOH619 4.0 43.9 1.0
CE1 B:HIS136 4.1 26.8 1.0
OE2 A:GLU174 4.2 23.5 1.0
CG A:GLU38 4.2 17.7 1.0
O A:HOH620 4.3 34.8 1.0
O2 A:SO4300 4.4 20.2 1.0
O3 A:SO4300 4.5 19.2 1.0
O4 A:SO4300 4.6 17.0 1.0
O B:THR107 4.7 18.5 1.0
CB B:THR107 4.7 18.1 1.0
S A:SO4300 4.8 17.6 1.0
OG1 A:THR93 4.8 22.0 1.0
O A:HOH475 5.0 23.9 1.0

Reference:

P.Kumar, M.Singh, R.Gautam, S.Karthikeyan. Potential Anti-Bacterial Drug Target: Structural Characterization of 3,4-Dihydroxy-2-Butanone-4-Phosphate Synthase From Salmonella Typhimurium LT2. Proteins V. 78 3292 2010.
ISSN: ISSN 0887-3585
PubMed: 20806221
DOI: 10.1002/PROT.22837
Page generated: Wed Aug 14 18:38:32 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy