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Magnesium in PDB 3lv0: Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native

Protein crystallography data

The structure of Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native, PDB code: 3lv0 was solved by Seattle Structural Genomics Center For Infectious Disease(Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.85
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 82.060, 138.600, 67.240, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 21.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native (pdb code 3lv0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native, PDB code: 3lv0:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 3lv0

Go back to Magnesium Binding Sites List in 3lv0
Magnesium binding site 1 out of 3 in the Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg264

b:17.7
occ:1.00
OE1 A:GLU69 2.0 20.7 1.0
O A:LEU88 2.0 15.6 1.0
O A:HOH321 2.0 18.0 1.0
O A:HOH322 2.1 21.6 1.0
OD1 A:ASP86 2.1 17.6 1.0
O A:HOH302 2.2 22.2 1.0
CD A:GLU69 3.1 22.4 1.0
C A:LEU88 3.1 15.1 1.0
CG A:ASP86 3.1 18.4 1.0
OD2 A:ASP86 3.4 19.8 1.0
OE2 A:GLU69 3.5 24.4 1.0
N A:LEU88 3.8 14.7 1.0
CA A:LEU88 3.9 14.3 1.0
N A:ASP89 3.9 14.8 1.0
OG1 A:THR91 4.0 18.0 1.0
OE2 A:GLU70 4.0 23.5 1.0
O A:HOH277 4.1 22.2 1.0
O A:HOH358 4.2 34.6 1.0
OD1 A:ASP46 4.2 20.6 1.0
O A:HOH337 4.2 27.8 1.0
CA A:ASP89 4.2 16.4 1.0
O A:HOH361 4.3 31.2 1.0
CG A:GLU69 4.3 20.6 1.0
CD A:PRO87 4.4 16.3 1.0
CB A:LEU88 4.4 15.4 1.0
CB A:ASP86 4.5 16.9 1.0
O A:HOH312 4.6 56.7 1.0
CB A:GLU69 4.6 20.0 1.0
N A:PRO87 4.7 15.2 1.0
CA A:ASP86 4.8 16.8 1.0
CG A:PRO87 4.8 16.1 1.0
C A:ASP86 4.8 15.3 1.0

Magnesium binding site 2 out of 3 in 3lv0

Go back to Magnesium Binding Sites List in 3lv0
Magnesium binding site 2 out of 3 in the Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg264

b:18.5
occ:1.00
OE1 B:GLU69 2.0 21.9 1.0
O B:HOH333 2.1 15.5 1.0
O B:LEU88 2.1 14.2 1.0
OD1 B:ASP86 2.1 19.3 1.0
O B:HOH319 2.2 20.1 1.0
O B:HOH332 2.2 20.0 1.0
C B:LEU88 3.1 12.7 1.0
CD B:GLU69 3.1 21.4 1.0
CG B:ASP86 3.1 18.8 1.0
OD2 B:ASP86 3.4 19.8 1.0
OE2 B:GLU69 3.5 24.3 1.0
N B:LEU88 3.8 12.0 1.0
N B:ASP89 3.9 13.7 1.0
O B:HOH303 3.9 24.0 1.0
CA B:LEU88 3.9 12.7 1.0
OG1 B:THR91 3.9 19.4 1.0
OE2 B:GLU70 4.1 23.7 1.0
CA B:ASP89 4.1 15.6 1.0
O B:HOH378 4.2 32.5 1.0
OD2 B:ASP46 4.2 19.0 1.0
O B:HOH381 4.3 31.6 1.0
O B:HOH339 4.3 27.4 1.0
CG B:GLU69 4.4 20.4 1.0
CD B:PRO87 4.4 15.6 1.0
CB B:LEU88 4.5 13.4 1.0
CB B:ASP86 4.5 16.1 1.0
CB B:GLU69 4.6 19.1 1.0
N B:PRO87 4.7 15.1 1.0
O B:HOH384 4.7 41.0 1.0
CA B:ASP86 4.8 16.5 1.0
C B:ASP86 4.8 15.2 1.0
CG B:PRO87 4.8 15.2 1.0

Magnesium binding site 3 out of 3 in 3lv0

Go back to Magnesium Binding Sites List in 3lv0
Magnesium binding site 3 out of 3 in the Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg265

b:59.7
occ:0.75
O B:HOH380 1.9 44.0 1.0
O B:HOH379 2.0 52.4 1.0
O B:HOH378 2.0 32.5 1.0
O B:HOH381 2.0 31.6 1.0
O B:HOH382 2.0 49.5 1.0
O B:HOH383 3.2 38.4 1.0
OE2 B:GLU69 3.4 24.3 1.0
O B:HOH284 3.8 55.9 1.0
OD2 B:ASP214 4.0 31.6 1.0
OD1 B:ASP214 4.0 30.4 1.0
NE1 B:TRP213 4.2 27.0 1.0
O B:HOH319 4.2 20.1 1.0
CD B:GLU69 4.3 21.4 1.0
O B:HOH287 4.4 53.9 1.0
CG B:ASP214 4.4 28.9 1.0
CG B:GLN211 4.6 35.2 1.0
OD1 B:ASP40 4.7 35.4 1.0
OE1 B:GLU69 4.8 21.9 1.0
O B:HOH303 4.9 24.0 1.0
O B:HOH332 4.9 20.0 1.0

Reference:

T.E.Edwards, J.Abendroth, B.Sankaran, Seattle Structural Genomics Center For Infectiousdisease (Ssgcid). Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae To Be Published.
Page generated: Mon Dec 14 08:24:47 2020

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