Magnesium in PDB 3lv0: Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native
Protein crystallography data
The structure of Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native, PDB code: 3lv0
was solved by
Seattle Structural Genomics Center For Infectious Disease(Ssgcid),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
1.85
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
82.060,
138.600,
67.240,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.1 /
21.8
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native
(pdb code 3lv0). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the
Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native, PDB code: 3lv0:
Jump to Magnesium binding site number:
1;
2;
3;
Magnesium binding site 1 out
of 3 in 3lv0
Go back to
Magnesium Binding Sites List in 3lv0
Magnesium binding site 1 out
of 3 in the Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg264
b:17.7
occ:1.00
|
OE1
|
A:GLU69
|
2.0
|
20.7
|
1.0
|
O
|
A:LEU88
|
2.0
|
15.6
|
1.0
|
O
|
A:HOH321
|
2.0
|
18.0
|
1.0
|
O
|
A:HOH322
|
2.1
|
21.6
|
1.0
|
OD1
|
A:ASP86
|
2.1
|
17.6
|
1.0
|
O
|
A:HOH302
|
2.2
|
22.2
|
1.0
|
CD
|
A:GLU69
|
3.1
|
22.4
|
1.0
|
C
|
A:LEU88
|
3.1
|
15.1
|
1.0
|
CG
|
A:ASP86
|
3.1
|
18.4
|
1.0
|
OD2
|
A:ASP86
|
3.4
|
19.8
|
1.0
|
OE2
|
A:GLU69
|
3.5
|
24.4
|
1.0
|
N
|
A:LEU88
|
3.8
|
14.7
|
1.0
|
CA
|
A:LEU88
|
3.9
|
14.3
|
1.0
|
N
|
A:ASP89
|
3.9
|
14.8
|
1.0
|
OG1
|
A:THR91
|
4.0
|
18.0
|
1.0
|
OE2
|
A:GLU70
|
4.0
|
23.5
|
1.0
|
O
|
A:HOH277
|
4.1
|
22.2
|
1.0
|
O
|
A:HOH358
|
4.2
|
34.6
|
1.0
|
OD1
|
A:ASP46
|
4.2
|
20.6
|
1.0
|
O
|
A:HOH337
|
4.2
|
27.8
|
1.0
|
CA
|
A:ASP89
|
4.2
|
16.4
|
1.0
|
O
|
A:HOH361
|
4.3
|
31.2
|
1.0
|
CG
|
A:GLU69
|
4.3
|
20.6
|
1.0
|
CD
|
A:PRO87
|
4.4
|
16.3
|
1.0
|
CB
|
A:LEU88
|
4.4
|
15.4
|
1.0
|
CB
|
A:ASP86
|
4.5
|
16.9
|
1.0
|
O
|
A:HOH312
|
4.6
|
56.7
|
1.0
|
CB
|
A:GLU69
|
4.6
|
20.0
|
1.0
|
N
|
A:PRO87
|
4.7
|
15.2
|
1.0
|
CA
|
A:ASP86
|
4.8
|
16.8
|
1.0
|
CG
|
A:PRO87
|
4.8
|
16.1
|
1.0
|
C
|
A:ASP86
|
4.8
|
15.3
|
1.0
|
|
Magnesium binding site 2 out
of 3 in 3lv0
Go back to
Magnesium Binding Sites List in 3lv0
Magnesium binding site 2 out
of 3 in the Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg264
b:18.5
occ:1.00
|
OE1
|
B:GLU69
|
2.0
|
21.9
|
1.0
|
O
|
B:HOH333
|
2.1
|
15.5
|
1.0
|
O
|
B:LEU88
|
2.1
|
14.2
|
1.0
|
OD1
|
B:ASP86
|
2.1
|
19.3
|
1.0
|
O
|
B:HOH319
|
2.2
|
20.1
|
1.0
|
O
|
B:HOH332
|
2.2
|
20.0
|
1.0
|
C
|
B:LEU88
|
3.1
|
12.7
|
1.0
|
CD
|
B:GLU69
|
3.1
|
21.4
|
1.0
|
CG
|
B:ASP86
|
3.1
|
18.8
|
1.0
|
OD2
|
B:ASP86
|
3.4
|
19.8
|
1.0
|
OE2
|
B:GLU69
|
3.5
|
24.3
|
1.0
|
N
|
B:LEU88
|
3.8
|
12.0
|
1.0
|
N
|
B:ASP89
|
3.9
|
13.7
|
1.0
|
O
|
B:HOH303
|
3.9
|
24.0
|
1.0
|
CA
|
B:LEU88
|
3.9
|
12.7
|
1.0
|
OG1
|
B:THR91
|
3.9
|
19.4
|
1.0
|
OE2
|
B:GLU70
|
4.1
|
23.7
|
1.0
|
CA
|
B:ASP89
|
4.1
|
15.6
|
1.0
|
O
|
B:HOH378
|
4.2
|
32.5
|
1.0
|
OD2
|
B:ASP46
|
4.2
|
19.0
|
1.0
|
O
|
B:HOH381
|
4.3
|
31.6
|
1.0
|
O
|
B:HOH339
|
4.3
|
27.4
|
1.0
|
CG
|
B:GLU69
|
4.4
|
20.4
|
1.0
|
CD
|
B:PRO87
|
4.4
|
15.6
|
1.0
|
CB
|
B:LEU88
|
4.5
|
13.4
|
1.0
|
CB
|
B:ASP86
|
4.5
|
16.1
|
1.0
|
CB
|
B:GLU69
|
4.6
|
19.1
|
1.0
|
N
|
B:PRO87
|
4.7
|
15.1
|
1.0
|
O
|
B:HOH384
|
4.7
|
41.0
|
1.0
|
CA
|
B:ASP86
|
4.8
|
16.5
|
1.0
|
C
|
B:ASP86
|
4.8
|
15.2
|
1.0
|
CG
|
B:PRO87
|
4.8
|
15.2
|
1.0
|
|
Magnesium binding site 3 out
of 3 in 3lv0
Go back to
Magnesium Binding Sites List in 3lv0
Magnesium binding site 3 out
of 3 in the Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae, Native within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg265
b:59.7
occ:0.75
|
O
|
B:HOH380
|
1.9
|
44.0
|
1.0
|
O
|
B:HOH379
|
2.0
|
52.4
|
1.0
|
O
|
B:HOH378
|
2.0
|
32.5
|
1.0
|
O
|
B:HOH381
|
2.0
|
31.6
|
1.0
|
O
|
B:HOH382
|
2.0
|
49.5
|
1.0
|
O
|
B:HOH383
|
3.2
|
38.4
|
1.0
|
OE2
|
B:GLU69
|
3.4
|
24.3
|
1.0
|
O
|
B:HOH284
|
3.8
|
55.9
|
1.0
|
OD2
|
B:ASP214
|
4.0
|
31.6
|
1.0
|
OD1
|
B:ASP214
|
4.0
|
30.4
|
1.0
|
NE1
|
B:TRP213
|
4.2
|
27.0
|
1.0
|
O
|
B:HOH319
|
4.2
|
20.1
|
1.0
|
CD
|
B:GLU69
|
4.3
|
21.4
|
1.0
|
O
|
B:HOH287
|
4.4
|
53.9
|
1.0
|
CG
|
B:ASP214
|
4.4
|
28.9
|
1.0
|
CG
|
B:GLN211
|
4.6
|
35.2
|
1.0
|
OD1
|
B:ASP40
|
4.7
|
35.4
|
1.0
|
OE1
|
B:GLU69
|
4.8
|
21.9
|
1.0
|
O
|
B:HOH303
|
4.9
|
24.0
|
1.0
|
O
|
B:HOH332
|
4.9
|
20.0
|
1.0
|
|
Reference:
T.E.Edwards,
J.Abendroth,
B.Sankaran,
Seattle Structural Genomics Center For Infectiousdisease (Ssgcid).
Crystal Structure of Extragenic Suppressor Protein Suhb From Bartonella Henselae To Be Published.
Page generated: Wed Aug 14 18:39:43 2024
|