Atomistry » Magnesium » PDB 3lpl-3m1i » 3lyd
Atomistry »
  Magnesium »
    PDB 3lpl-3m1i »
      3lyd »

Magnesium in PDB 3lyd: Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans

Protein crystallography data

The structure of Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans, PDB code: 3lyd was solved by C.Chang, L.Volkart, J.Bearden, D.Wu, J.Eisen, C.Kerfeld, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.45
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.551, 70.879, 99.480, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 19.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans (pdb code 3lyd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans, PDB code: 3lyd:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3lyd

Go back to Magnesium Binding Sites List in 3lyd
Magnesium binding site 1 out of 2 in the Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg201

b:23.6
occ:1.00
O A:HOH269 2.0 15.9 1.0
OE2 A:GLU86 2.1 18.7 1.0
O A:HOH361 2.1 26.1 1.0
O A:HOH349 2.2 27.0 1.0
O A:HOH180 2.2 16.9 1.0
CD A:GLU86 3.1 17.2 1.0
OE1 A:GLU86 3.4 19.6 1.0
NH2 A:ARG66 4.0 9.9 1.0
NH1 A:ARG66 4.0 10.0 1.0
O A:HOH262 4.1 23.4 1.0
O A:HOH274 4.3 8.2 1.0
CZ A:ARG66 4.4 9.7 1.0
CG A:GLU86 4.4 9.9 1.0
O A:HOH258 4.4 17.2 1.0

Magnesium binding site 2 out of 2 in 3lyd

Go back to Magnesium Binding Sites List in 3lyd
Magnesium binding site 2 out of 2 in the Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:29.7
occ:1.00
O A:HOH227 1.9 12.7 1.0
O A:HOH253 2.1 26.9 1.0
O A:HOH424 2.1 25.9 1.0
O A:HOH382 3.0 27.7 1.0
O A:ASP90 3.6 8.8 0.5
O A:HOH199 3.7 21.1 1.0
OD1 A:ASP90 4.0 6.7 0.5
OD2 A:ASP90 4.1 6.3 0.5
O A:HOH460 4.1 29.1 1.0
CG A:ASP90 4.2 7.2 0.5
O A:VAL154 4.2 9.7 1.0
CB A:ASP90 4.3 7.6 0.5
O A:HOH231 4.4 12.0 1.0
OD1 A:ASP90 4.6 11.0 0.5
C A:ASP90 4.6 8.7 0.5
CG A:ASP90 4.7 10.6 0.5
CE2 A:PHE92 4.7 10.2 0.5
O A:ASP90 4.8 6.1 0.5
CE2 A:PHE92 4.8 8.8 0.5
CD A:PRO156 4.9 12.3 1.0

Reference:

C.Chang, L.Volkart, J.Bearden, D.Wu, J.Eisen, C.Kerfeld, A.Joachimiak. Crystal Structure of Putative Uncharacterized Protein From Jonesia Denitrificans To Be Published.
Page generated: Wed Aug 14 18:41:56 2024

Last articles

Cl in 2XYJ
Cl in 2XYQ
Cl in 2XYN
Cl in 2XX2
Cl in 2XYD
Cl in 2XY9
Cl in 2XXV
Cl in 2XXW
Cl in 2XXU
Cl in 2XXT
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy