Magnesium in PDB 3m1i: Crystal Structure of Yeast CRM1 (XPO1P) in Complex with Yeast RANBP1 (YRB1P) and Yeast Rangtp (GSP1PGTP)

The structure of Crystal Structure of Yeast CRM1 (XPO1P) in Complex with Yeast RANBP1 (YRB1P) and Yeast Rangtp (GSP1PGTP), PDB code: 3m1i was solved by M.Koyama, Y.Matsuura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.51 / 2.00
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	106.209, 106.209, 303.602, 90.00, 90.00, 90.00
R / Rfree (%)	17.5 / 22

The binding sites of Magnesium atom in the Crystal Structure of Yeast CRM1 (XPO1P) in Complex with Yeast RANBP1 (YRB1P) and Yeast Rangtp (GSP1PGTP) (pdb code 3m1i). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Yeast CRM1 (XPO1P) in Complex with Yeast RANBP1 (YRB1P) and Yeast Rangtp (GSP1PGTP), PDB code: 3m1i:

Magnesium binding site 1 out of 1 in the Crystal Structure of Yeast CRM1 (XPO1P) in Complex with Yeast RANBP1 (YRB1P) and Yeast Rangtp (GSP1PGTP)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Yeast CRM1 (XPO1P) in Complex with Yeast RANBP1 (YRB1P) and Yeast Rangtp (GSP1PGTP) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1178 b:18.1 occ:1.00 O2G A:GTP1177 1.9 26.7 1.0 O A:HOH763 1.9 23.0 1.0 O A:HOH839 1.9 25.7 1.0 O2B A:GTP1177 2.0 21.4 1.0 OG1 A:THR26 2.0 25.4 1.0 OG1 A:THR44 2.1 28.8 1.0 CB A:THR44 3.2 27.5 1.0 CB A:THR26 3.2 26.2 1.0 PG A:GTP1177 3.2 26.5 1.0 PB A:GTP1177 3.3 24.1 1.0 O3B A:GTP1177 3.5 25.8 1.0 N A:THR44 3.7 30.0 1.0 O3G A:GTP1177 3.9 26.1 1.0 N A:THR26 3.9 25.4 1.0 CA A:THR44 4.0 30.6 1.0 OD2 A:ASP67 4.0 32.3 1.0 CA A:THR26 4.1 25.4 1.0 OD1 A:ASP67 4.1 28.9 1.0 O2A A:GTP1177 4.2 28.1 1.0 O3A A:GTP1177 4.2 22.1 1.0 O A:HOH267 4.2 37.0 1.0 CG2 A:THR26 4.3 27.9 1.0 CG2 A:THR44 4.3 28.5 1.0 O1B A:GTP1177 4.3 24.7 1.0 O1G A:GTP1177 4.4 28.2 1.0 CG A:ASP67 4.5 31.2 1.0 PA A:GTP1177 4.5 29.4 1.0 O A:THR68 4.6 27.5 1.0 CB A:LYS25 4.7 25.6 1.0 C A:ALA43 4.7 32.6 1.0 O A:ILE42 4.8 32.2 1.0 CE A:LYS25 4.8 27.2 1.0 O1A A:GTP1177 4.9 26.5 1.0 C A:LYS25 4.9 25.0 1.0 NZ A:LYS25 4.9 28.8 1.0

M.Koyama, Y.Matsuura. An Allosteric Mechanism to Displace Nuclear Export Cargo From CRM1 and Rangtp By RANBP1 Embo J. V. 29 2002 2010.
ISSN: ISSN 0261-4189
PubMed: 20485264
DOI: 10.1038/EMBOJ.2010.89