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Magnesium in PDB 3nc0: Crystal Structure of the Hiv-1 Rev Nes-CRM1-Rangtp Nuclear Export Complex (Crystal II)

Protein crystallography data

The structure of Crystal Structure of the Hiv-1 Rev Nes-CRM1-Rangtp Nuclear Export Complex (Crystal II), PDB code: 3nc0 was solved by T.Guttler, T.Madl, P.Neumann, D.Deichsel, L.Corsini, T.Monecke, R.Ficner, M.Sattler, D.Gorlich, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.05 / 2.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 73.262, 225.895, 163.984, 90.00, 100.75, 90.00
R / Rfree (%) 24.2 / 29.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Hiv-1 Rev Nes-CRM1-Rangtp Nuclear Export Complex (Crystal II) (pdb code 3nc0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Hiv-1 Rev Nes-CRM1-Rangtp Nuclear Export Complex (Crystal II), PDB code: 3nc0:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3nc0

Go back to Magnesium Binding Sites List in 3nc0
Magnesium binding site 1 out of 2 in the Crystal Structure of the Hiv-1 Rev Nes-CRM1-Rangtp Nuclear Export Complex (Crystal II)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Hiv-1 Rev Nes-CRM1-Rangtp Nuclear Export Complex (Crystal II) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg218

b:54.4
occ:1.00
OG1 C:THR42 2.0 47.4 1.0
OG1 C:THR24 2.1 23.2 1.0
O1G C:GTP217 2.3 16.0 1.0
O1B C:GTP217 2.6 42.5 1.0
CB C:THR42 3.0 31.4 1.0
OD2 C:ASP65 3.0 42.8 1.0
OD1 C:ASP65 3.2 59.8 1.0
CG C:ASP65 3.5 44.6 1.0
CB C:THR24 3.5 29.4 1.0
PG C:GTP217 3.6 39.7 0.5
O C:THR66 3.6 28.1 1.0
N C:THR24 3.8 38.3 1.0
PB C:GTP217 3.9 46.1 1.0
CG2 C:THR42 3.9 45.7 1.0
O3G C:GTP217 3.9 20.1 1.0
CA C:THR24 4.1 28.9 1.0
N C:THR42 4.2 17.0 1.0
O3B C:GTP217 4.2 9.8 1.0
CA C:THR42 4.2 26.8 1.0
O2B C:GTP217 4.4 53.9 1.0
CB C:LYS23 4.5 23.8 1.0
CG2 C:THR24 4.5 42.2 1.0
O1A C:GTP217 4.7 9.1 1.0
C C:THR66 4.7 28.2 1.0
CE C:LYS23 4.7 18.9 1.0
O C:ASP65 4.8 40.2 1.0
O2G C:GTP217 4.8 11.0 1.0
C C:LYS23 4.8 30.4 1.0
CB C:ASP65 4.9 19.3 1.0

Magnesium binding site 2 out of 2 in 3nc0

Go back to Magnesium Binding Sites List in 3nc0
Magnesium binding site 2 out of 2 in the Crystal Structure of the Hiv-1 Rev Nes-CRM1-Rangtp Nuclear Export Complex (Crystal II)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Hiv-1 Rev Nes-CRM1-Rangtp Nuclear Export Complex (Crystal II) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg218

b:35.8
occ:1.00
O1G F:GTP217 2.5 16.3 1.0
OG1 F:THR24 2.7 21.7 1.0
O1B F:GTP217 2.7 8.9 1.0
OD2 F:ASP65 2.7 44.5 1.0
OG1 F:THR42 2.8 48.5 1.0
O F:THR66 3.1 16.2 1.0
OD1 F:ASP65 3.3 61.6 1.0
CG F:ASP65 3.4 47.5 1.0
CB F:THR42 3.4 25.9 1.0
PG F:GTP217 3.6 28.4 1.0
O3G F:GTP217 3.8 37.6 1.0
N F:THR24 3.8 34.7 1.0
PB F:GTP217 3.9 28.2 1.0
CB F:THR24 3.9 35.2 1.0
CE F:LYS23 3.9 22.0 1.0
CB F:LYS23 4.0 29.1 1.0
O3B F:GTP217 4.2 16.1 1.0
C F:THR66 4.2 17.9 1.0
CG2 F:THR42 4.2 42.8 1.0
CA F:THR24 4.3 31.5 1.0
NZ F:LYS23 4.4 37.7 1.0
O2B F:GTP217 4.5 48.9 1.0
O F:ASP65 4.6 41.3 1.0
C F:LYS23 4.7 28.6 1.0
N F:THR42 4.7 22.7 1.0
CA F:THR42 4.7 20.4 1.0
CA F:ALA67 4.7 31.8 1.0
C F:ASP65 4.8 24.5 1.0
CD F:LYS23 4.8 36.1 1.0
CB F:ASP65 4.8 20.2 1.0
CA F:LYS23 4.8 28.2 1.0
O2G F:GTP217 4.9 26.8 1.0
N F:ALA67 4.9 22.4 1.0
CG F:LYS23 5.0 37.9 1.0

Reference:

T.Guttler, T.Madl, P.Neumann, D.Deichsel, L.Corsini, T.Monecke, R.Ficner, M.Sattler, D.Gorlich. Nes Consensus Redefined By Structures of Pki-Type and Rev-Type Nuclear Export Signals Bound to CRM1. Nat.Struct.Mol.Biol. V. 17 1367 2010.
ISSN: ISSN 1545-9993
PubMed: 20972448
DOI: 10.1038/NSMB.1931
Page generated: Mon Dec 14 08:28:15 2020

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