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Magnesium in PDB 3nmv: Crystal Structure of Pyrabactin-Bound Abscisic Acid Receptor PYL2 Mutant A93F in Complex with Type 2C Protein Phosphatase ABI2

Enzymatic activity of Crystal Structure of Pyrabactin-Bound Abscisic Acid Receptor PYL2 Mutant A93F in Complex with Type 2C Protein Phosphatase ABI2

All present enzymatic activity of Crystal Structure of Pyrabactin-Bound Abscisic Acid Receptor PYL2 Mutant A93F in Complex with Type 2C Protein Phosphatase ABI2:
3.1.3.16;

Protein crystallography data

The structure of Crystal Structure of Pyrabactin-Bound Abscisic Acid Receptor PYL2 Mutant A93F in Complex with Type 2C Protein Phosphatase ABI2, PDB code: 3nmv was solved by X.E.Zhou, K.Melcher, L.-M.Ng, F.-F.Soon, Y.Xu, K.M.Suino-Powell, A.Kovach, J.Li, E.-L.Yong, H.E.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.60 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.129, 97.587, 134.505, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 22.3

Other elements in 3nmv:

The structure of Crystal Structure of Pyrabactin-Bound Abscisic Acid Receptor PYL2 Mutant A93F in Complex with Type 2C Protein Phosphatase ABI2 also contains other interesting chemical elements:

Bromine (Br) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Pyrabactin-Bound Abscisic Acid Receptor PYL2 Mutant A93F in Complex with Type 2C Protein Phosphatase ABI2 (pdb code 3nmv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Pyrabactin-Bound Abscisic Acid Receptor PYL2 Mutant A93F in Complex with Type 2C Protein Phosphatase ABI2, PDB code: 3nmv:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 3nmv

Go back to Magnesium Binding Sites List in 3nmv
Magnesium binding site 1 out of 3 in the Crystal Structure of Pyrabactin-Bound Abscisic Acid Receptor PYL2 Mutant A93F in Complex with Type 2C Protein Phosphatase ABI2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pyrabactin-Bound Abscisic Acid Receptor PYL2 Mutant A93F in Complex with Type 2C Protein Phosphatase ABI2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg424

b:56.6
occ:1.00
 O B:HOH1 2.2 44.3 1.0
OD2 B:ASP165 2.3 35.1 1.0
OD2 B:ASP402 2.4 44.0 1.0
OD1 B:ASP337 2.4 37.9 1.0
CG B:ASP165 3.0 35.3 1.0
OD1 B:ASP165 3.3 36.5 1.0
CG B:ASP402 3.3 50.0 1.0
OD1 B:ASP402 3.5 45.6 1.0
O B:ASN403 3.6 42.3 1.0
CG B:ASP337 3.6 38.3 1.0
OD1 B:ASP127 3.6 35.5 1.0
N B:GLY338 3.8 42.4 1.0
CB B:SER336 4.0 37.2 1.0
O B:HOH11 4.0 39.6 1.0
OG B:SER336 4.1 36.9 1.0
N B:ASP337 4.2 38.8 1.0
CB B:ASP165 4.3 32.3 1.0
OD2 B:ASP337 4.3 37.5 1.0
MG B:MG425 4.3 43.0 1.0
CA B:GLY338 4.4 43.6 1.0
CG B:ASP127 4.5 36.3 1.0
OD2 B:ASP127 4.5 37.0 1.0
CB B:ASP402 4.5 52.8 1.0
C B:ASP337 4.5 40.6 1.0
C B:ASN403 4.6 44.7 1.0
O B:HOH61 4.7 33.3 1.0
CA B:ASP337 4.7 39.6 1.0
CB B:ASN403 4.7 45.2 1.0
O B:HOH430 4.7 40.6 1.0
N B:ASN403 4.8 46.9 1.0
CB B:ASP337 4.8 38.8 1.0
C B:SER336 4.8 38.4 1.0
CA B:ASN403 5.0 45.6 1.0

Magnesium binding site 2 out of 3 in 3nmv

Go back to Magnesium Binding Sites List in 3nmv
Magnesium binding site 2 out of 3 in the Crystal Structure of Pyrabactin-Bound Abscisic Acid Receptor PYL2 Mutant A93F in Complex with Type 2C Protein Phosphatase ABI2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Pyrabactin-Bound Abscisic Acid Receptor PYL2 Mutant A93F in Complex with Type 2C Protein Phosphatase ABI2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg425

b:43.0
occ:1.00
 OG B:SER252 2.7 36.1 1.0
OD2 B:ASP165 2.7 35.1 1.0
N B:ASP337 2.8 38.8 1.0
OD1 B:ASP251 3.0 41.2 1.0
CG B:ASP337 3.3 38.3 1.0
CB B:ASP165 3.4 32.3 1.0
OD1 B:ASP337 3.4 37.9 1.0
CA B:SER252 3.4 33.9 1.0
N B:SER252 3.4 33.9 1.0
CG B:ASP165 3.4 35.3 1.0
O B:ASP251 3.5 34.8 1.0
CA B:SER336 3.5 38.0 1.0
CB B:ASP337 3.6 38.8 1.0
O B:HOH61 3.6 33.3 1.0
CB B:SER252 3.6 34.3 1.0
C B:SER336 3.6 38.4 1.0
OD2 B:ASP337 3.6 37.5 1.0
C B:ASP251 3.6 34.9 1.0
CB B:SER336 3.7 37.2 1.0
CA B:ASP337 3.7 39.6 1.0
CG B:ASP251 4.1 40.3 1.0
CG2 B:THR233 4.1 28.3 1.0
OG1 B:THR233 4.3 30.8 1.0
MG B:MG424 4.3 56.6 1.0
O B:HOH1 4.5 44.3 1.0
OD1 B:ASP165 4.7 36.5 1.0
CB B:THR233 4.7 28.3 1.0
CA B:ASP251 4.7 35.6 1.0
O B:SER336 4.8 38.3 1.0
CB B:ASP251 4.8 36.4 1.0
CA B:ASP165 4.9 32.4 1.0
N B:SER336 4.9 37.9 1.0
OD2 B:ASP251 4.9 48.9 1.0
OG B:SER336 4.9 36.9 1.0
C B:SER252 4.9 33.3 1.0
C B:ASP337 5.0 40.6 1.0

Magnesium binding site 3 out of 3 in 3nmv

Go back to Magnesium Binding Sites List in 3nmv
Magnesium binding site 3 out of 3 in the Crystal Structure of Pyrabactin-Bound Abscisic Acid Receptor PYL2 Mutant A93F in Complex with Type 2C Protein Phosphatase ABI2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Pyrabactin-Bound Abscisic Acid Receptor PYL2 Mutant A93F in Complex with Type 2C Protein Phosphatase ABI2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg426

b:48.1
occ:1.00
 OE1 B:GLU126 2.5 36.3 1.0
O B:HOH11 2.6 39.6 1.0
O B:HOH75 2.9 49.9 1.0
O B:HOH428 3.0 51.4 1.0
O B:GLY166 3.3 32.8 1.0
CD B:GLU126 3.7 38.9 1.0
OG A:SER89 3.7 35.6 1.0
CB A:SER89 3.8 34.2 1.0
O B:HOH430 3.9 40.6 1.0
CB B:GLU126 3.9 39.2 1.0
CG B:GLU126 4.2 38.2 1.0
OD1 B:ASN403 4.4 38.3 1.0
C B:GLY166 4.4 31.0 1.0
CA B:HIS167 4.5 31.5 1.0
OD1 B:ASP165 4.6 36.5 1.0
OE2 B:GLU126 4.7 42.5 1.0
O B:HOH27 4.8 49.5 1.0
OD1 B:ASP402 4.8 45.6 1.0
N B:HIS167 5.0 31.9 1.0
NH2 B:ARG122 5.0 77.3 1.0

Reference:

K.Melcher, Y.Xu, L.M.Ng, X.E.Zhou, F.F.Soon, V.Chinnusamy, K.M.Suino-Powell, A.Kovach, F.S.Tham, S.R.Cutler, J.Li, E.L.Yong, J.K.Zhu, H.E.Xu. Identification and Mechanism of Aba Receptor Antagonism. Nat.Struct.Mol.Biol. V. 17 1102 2010.
ISSN: ISSN 1545-9993
PubMed: 20729862
DOI: 10.1038/NSMB.1887
Page generated: Thu Aug 15 08:04:37 2024

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