Magnesium in PDB 3no3: Crystal Structure of A Glycerophosphodiester Phosphodiesterase (BDI_0402) From Parabacteroides Distasonis Atcc 8503 at 1.89 A Resolution

The structure of Crystal Structure of A Glycerophosphodiester Phosphodiesterase (BDI_0402) From Parabacteroides Distasonis Atcc 8503 at 1.89 A Resolution, PDB code: 3no3 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.95 / 1.89
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	137.460, 40.876, 48.328, 90.00, 99.39, 90.00
R / Rfree (%)	15 / 17.7

The binding sites of Magnesium atom in the Crystal Structure of A Glycerophosphodiester Phosphodiesterase (BDI_0402) From Parabacteroides Distasonis Atcc 8503 at 1.89 A Resolution (pdb code 3no3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Glycerophosphodiester Phosphodiesterase (BDI_0402) From Parabacteroides Distasonis Atcc 8503 at 1.89 A Resolution, PDB code: 3no3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of A Glycerophosphodiester Phosphodiesterase (BDI_0402) From Parabacteroides Distasonis Atcc 8503 at 1.89 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Glycerophosphodiester Phosphodiesterase (BDI_0402) From Parabacteroides Distasonis Atcc 8503 at 1.89 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:15.7 occ:1.00 OE1 A:GLU123 2.0 14.1 1.0 OD1 A:ASP61 2.1 14.7 1.0 OE2 A:GLU59 2.1 16.8 1.0 O2 A:GOL303 2.1 17.9 1.0 O A:HOH310 2.1 15.3 1.0 O A:HOH305 2.2 11.7 1.0 CG A:ASP61 3.1 15.1 1.0 CD A:GLU123 3.1 18.1 1.0 CD A:GLU59 3.2 17.7 1.0 OD2 A:ASP61 3.3 16.7 1.0 C2 A:GOL303 3.4 21.0 1.0 OE1 A:GLU59 3.5 17.1 1.0 C3 A:GOL303 3.9 19.4 1.0 OE2 A:GLU123 3.9 15.8 1.0 O3 A:GOL303 3.9 15.9 1.0 CB A:GLU123 3.9 15.7 1.0 C1 A:GOL303 4.0 23.4 1.0 NE2 A:HIS30 4.0 20.4 1.0 CG A:GLU123 4.0 14.0 1.0 O A:HOH371 4.2 18.7 1.0 O1 A:GOL303 4.3 29.1 1.0 CB A:ASP61 4.4 14.2 1.0 CG A:GLU59 4.5 17.2 1.0 CD2 A:HIS30 4.5 17.3 1.0 ND1 A:HIS74 4.8 23.9 1.0 NE A:ARG31 4.9 20.3 1.0 CA A:ASP61 5.0 13.8 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of A Glycerophosphodiester Phosphodiesterase (BDI_0402) From Parabacteroides Distasonis Atcc 8503 at 1.89 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Glycerophosphodiester Phosphodiesterase (BDI_0402) From Parabacteroides Distasonis Atcc 8503 at 1.89 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:19.4 occ:0.50 O A:HOH454 1.9 29.3 1.0 O A:GLY0 2.1 39.8 1.0 N A:GLY0 2.3 40.7 1.0 C A:GLY0 3.0 41.3 1.0 CA A:GLY0 3.2 41.6 1.0 O A:HOH538 3.6 47.4 1.0 N A:LYS22 4.3 42.3 1.0 O A:HOH592 4.5 40.7 1.0 OD1 A:ASP23 4.5 34.7 1.0 CA A:LYS22 5.0 42.2 1.0 C A:LYS22 5.0 40.4 1.0 NH2 A:ARG256 5.0 39.8 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.