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Magnesium in PDB 3nrt: The Crystal Strucutre of Putative Ryanodine Receptor From Bacteroides Thetaiotaomicron Vpi-5482

Protein crystallography data

The structure of The Crystal Strucutre of Putative Ryanodine Receptor From Bacteroides Thetaiotaomicron Vpi-5482, PDB code: 3nrt was solved by R.Wu, R.Zhang, A.James, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.48 / 2.54
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 74.642, 89.272, 74.697, 90.00, 110.99, 90.00
R / Rfree (%) 19.8 / 24.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Crystal Strucutre of Putative Ryanodine Receptor From Bacteroides Thetaiotaomicron Vpi-5482 (pdb code 3nrt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Strucutre of Putative Ryanodine Receptor From Bacteroides Thetaiotaomicron Vpi-5482, PDB code: 3nrt:

Magnesium binding site 1 out of 1 in 3nrt

Go back to Magnesium Binding Sites List in 3nrt
Magnesium binding site 1 out of 1 in the The Crystal Strucutre of Putative Ryanodine Receptor From Bacteroides Thetaiotaomicron Vpi-5482


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Strucutre of Putative Ryanodine Receptor From Bacteroides Thetaiotaomicron Vpi-5482 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg102

b:71.6
occ:1.00
OD2 A:ASP56 2.6 84.4 1.0
OD2 B:ASP56 2.7 81.4 1.0
CG B:ASP56 3.6 66.2 1.0
CG A:ASP56 3.8 70.2 1.0
OD1 B:ASP56 4.1 62.2 1.0
NE B:ARG54 4.2 55.7 1.0
CD B:ARG54 4.2 48.6 1.0
NE A:ARG54 4.3 65.8 1.0
N B:ASP56 4.3 39.4 1.0
O B:ARG54 4.4 55.1 1.0
O A:ARG54 4.5 49.2 1.0
N A:ASP56 4.5 44.3 1.0
CD A:ARG54 4.5 51.1 1.0
OD1 A:ASP56 4.5 68.9 1.0
CB B:ASP56 4.6 46.4 1.0
CA B:ASP55 4.7 50.6 1.0
CB A:ASP56 4.7 53.0 1.0
C B:ARG54 4.8 51.6 1.0
N B:ASP55 4.8 53.8 1.0
CG A:ARG54 4.9 35.6 1.0
C A:ARG54 4.9 50.2 1.0
CG B:ARG54 5.0 36.1 1.0
CA A:ASP55 5.0 49.7 1.0

Reference:

W.Ruiying, Z.Rongguang, A.James, J.Andrzej, Midwest Center For Structural Genomics (Mcsg). He Crystal Strucutre of Putative Ryanodine Receptor From Bacteroides Thetaiotaomicron Vpi-5482 To Be Published.
Page generated: Mon Dec 14 08:29:56 2020

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