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Magnesium in PDB 3nz2: Crystal Structure of Hexapeptide-Repeat Containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor

Protein crystallography data

The structure of Crystal Structure of Hexapeptide-Repeat Containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor, PDB code: 3nz2 was solved by Y.Kim, N.Maltseva, J.Hasseman, W.F.Anderson, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.63 / 2.35
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 77.316, 135.801, 120.535, 90.00, 91.77, 90.00
R / Rfree (%) 18.8 / 25.3

Other elements in 3nz2:

The structure of Crystal Structure of Hexapeptide-Repeat Containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Hexapeptide-Repeat Containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor (pdb code 3nz2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Hexapeptide-Repeat Containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor, PDB code: 3nz2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3nz2

Go back to Magnesium Binding Sites List in 3nz2
Magnesium binding site 1 out of 2 in the Crystal Structure of Hexapeptide-Repeat Containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Hexapeptide-Repeat Containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg197

b:38.7
occ:0.63
MG C:MG197 0.0 38.7 0.6
MG C:MG197 1.2 35.7 0.4
O C:ASN159 2.0 19.4 1.0
OD1 B:ASN159 2.2 26.8 1.0
OG1 C:THR175 2.2 29.9 1.0
O C:HOH199 2.9 22.9 1.0
C C:ASN159 3.2 21.7 1.0
CG B:ASN159 3.3 19.2 1.0
O B:HOH268 3.5 9.6 1.0
CG C:ASN159 3.6 30.6 1.0
CB C:THR175 3.6 29.2 1.0
ND2 C:ASN159 3.6 33.0 1.0
OD1 C:ASN159 3.7 25.4 1.0
CG2 C:VAL161 3.8 5.6 1.0
O B:HOH988 4.0 86.4 1.0
CA C:SER160 4.0 15.5 1.0
N C:SER160 4.0 13.6 1.0
N C:VAL161 4.1 15.8 1.0
C C:SER160 4.1 16.0 1.0
CB B:ASN159 4.1 16.5 1.0
CG2 C:THR175 4.2 10.7 1.0
ND2 B:ASN159 4.2 15.5 1.0
CB C:ASN159 4.2 25.8 1.0
CA C:ASN159 4.2 24.3 1.0
CA C:THR175 4.5 28.7 1.0
N C:THR175 4.5 26.5 1.0
CB C:VAL161 4.5 13.3 1.0
O C:SER160 4.6 28.4 1.0
ND2 A:ASN159 4.7 24.3 1.0
C C:GLY174 4.8 20.2 1.0
O B:ASN159 4.8 19.1 1.0
O C:GLY174 4.9 20.7 1.0
CA C:VAL161 4.9 15.4 1.0
O A:HOH204 5.0 17.6 1.0

Magnesium binding site 2 out of 2 in 3nz2

Go back to Magnesium Binding Sites List in 3nz2
Magnesium binding site 2 out of 2 in the Crystal Structure of Hexapeptide-Repeat Containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Hexapeptide-Repeat Containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg197

b:35.7
occ:0.37
MG C:MG197 0.0 35.7 0.4
MG C:MG197 1.2 38.7 0.6
O C:HOH199 2.3 22.9 1.0
O C:ASN159 2.3 19.4 1.0
O B:HOH268 2.5 9.6 1.0
OG1 C:THR175 2.6 29.9 1.0
OD1 B:ASN159 2.7 26.8 1.0
ND2 C:ASN159 2.9 33.0 1.0
CG C:ASN159 3.2 30.6 1.0
C C:ASN159 3.5 21.7 1.0
O B:HOH988 3.6 86.4 1.0
OD1 C:ASN159 3.7 25.4 1.0
CB C:ASN159 3.9 25.8 1.0
CG B:ASN159 3.9 19.2 1.0
CB C:THR175 3.9 29.2 1.0
ND2 A:ASN159 4.2 24.3 1.0
CA C:ASN159 4.3 24.3 1.0
OG1 A:THR175 4.3 33.4 1.0
N C:SER160 4.4 13.6 1.0
CA C:SER160 4.6 15.5 1.0
CB A:THR175 4.6 34.7 1.0
ND2 B:ASN159 4.6 15.5 1.0
N C:THR175 4.6 26.5 1.0
O A:HOH204 4.7 17.6 1.0
CG2 A:THR175 4.7 32.9 1.0
O A:HOH203 4.7 10.6 1.0
CG2 C:THR175 4.8 10.7 1.0
CA C:THR175 4.9 28.7 1.0
C C:GLY174 5.0 20.2 1.0
CB B:ASN159 5.0 16.5 1.0
C C:SER160 5.0 16.0 1.0

Reference:

Y.Kim, N.Maltseva, J.Hasseman, W.F.Anderson, A.Joachimiak. Crystal Structure of Hexapeptide-Repeat Containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A From Vibrio Cholerae O1 Biovar Eltor To Be Published.
Page generated: Thu Aug 15 08:08:42 2024

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