Magnesium in PDB 3nzr: Crystal Structure of 2-Dehydro-3-Deoxyphosphogluconate Aldolase From Vibrio Fischeri ES114

All present enzymatic activity of Crystal Structure of 2-Dehydro-3-Deoxyphosphogluconate Aldolase From Vibrio Fischeri ES114:
4.1.2.14; 4.1.3.16;

The structure of Crystal Structure of 2-Dehydro-3-Deoxyphosphogluconate Aldolase From Vibrio Fischeri ES114, PDB code: 3nzr was solved by B.Nocek, N.Marshall, B.Feldmann, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	56.752, 136.451, 62.295, 90.00, 101.38, 90.00
R / Rfree (%)	17.4 / 22.5

The binding sites of Magnesium atom in the Crystal Structure of 2-Dehydro-3-Deoxyphosphogluconate Aldolase From Vibrio Fischeri ES114 (pdb code 3nzr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of 2-Dehydro-3-Deoxyphosphogluconate Aldolase From Vibrio Fischeri ES114, PDB code: 3nzr:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of 2-Dehydro-3-Deoxyphosphogluconate Aldolase From Vibrio Fischeri ES114


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of 2-Dehydro-3-Deoxyphosphogluconate Aldolase From Vibrio Fischeri ES114 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:12.8 occ:0.90 O A:HOH1220 1.9 31.2 1.0 O A:HOH1218 2.0 31.0 1.0 O A:HOH1219 2.0 26.9 1.0 O A:HOH1217 2.0 25.0 1.0 O A:HOH1221 2.1 34.9 1.0 NE2 A:HIS34 2.2 25.2 1.0 CE1 A:HIS34 3.0 28.0 1.0 CD2 A:HIS34 3.3 24.2 1.0 O A:HOH322 4.1 36.0 1.0 ND1 A:HIS34 4.2 23.1 1.0 O A:HOH1223 4.3 39.3 1.0 CG A:HIS34 4.3 21.1 1.0 O A:GLU32 4.4 27.2 1.0 O A:HOH1224 4.5 44.6 1.0 CD1 A:TYR8 4.5 29.2 1.0 OE1 A:GLU32 4.6 42.4 1.0 CB A:GLU32 4.9 31.1 1.0 CE1 A:TYR8 4.9 31.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of 2-Dehydro-3-Deoxyphosphogluconate Aldolase From Vibrio Fischeri ES114


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of 2-Dehydro-3-Deoxyphosphogluconate Aldolase From Vibrio Fischeri ES114 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg247 b:29.2 occ:1.00 O A:HOH1225 1.9 36.5 1.0 O A:HOH1213 2.0 38.4 1.0 O A:HOH1227 2.0 35.7 1.0 OD2 A:ASP194 2.1 33.4 1.0 O A:HOH1226 2.2 38.7 1.0 O A:HOH325 2.3 50.9 1.0 CG A:ASP194 3.1 31.7 1.0 OD1 A:ASP194 3.4 31.5 1.0 O A:HOH1212 4.2 37.3 1.0 O A:HOH342 4.2 37.9 1.0 OE1 A:GLU196 4.3 45.4 1.0 CB A:ASP194 4.5 26.4 1.0 ND2 A:ASN197 4.7 27.6 1.0 CB A:GLU196 4.9 38.6 1.0

B.Nocek, N.Marshall, B.Feldmann, A.Joachimiak. Crystal Structure of 2-Dehydro-3-Deoxyphosphogluconate Aldolase From Vibrio Fischeri ES114 To Be Published.