Magnesium in PDB 3o5t: Structure of Drag-Glnz Complex with Adp

All present enzymatic activity of Structure of Drag-Glnz Complex with Adp:
3.2.2.24;

The structure of Structure of Drag-Glnz Complex with Adp, PDB code: 3o5t was solved by C.Rajendran, X.-D.Li, F.K.Winkler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	70.00 / 2.09
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	115.654, 115.654, 105.626, 90.00, 90.00, 120.00
R / Rfree (%)	15.1 / 19.1

The binding sites of Magnesium atom in the Structure of Drag-Glnz Complex with Adp (pdb code 3o5t). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Drag-Glnz Complex with Adp, PDB code: 3o5t:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Drag-Glnz Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Drag-Glnz Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg298 b:37.5 occ:1.00 OD1 A:ASP243 2.2 36.4 1.0 O A:HOH565 2.3 42.0 1.0 OG1 A:THR246 2.5 17.9 1.0 OD1 A:ASP245 2.5 33.4 1.0 OD2 A:ASP245 2.5 34.6 1.0 CG A:ASP245 2.8 28.0 1.0 OE2 A:GLU28 2.8 32.4 1.0 O A:HOH586 2.9 37.5 1.0 CG A:ASP243 3.1 29.4 1.0 OD2 A:ASP243 3.2 31.5 1.0 CB A:THR246 3.6 19.0 1.0 MG A:MG299 3.7 28.9 1.0 CD A:GLU28 3.8 29.6 1.0 N A:THR246 4.0 19.3 1.0 OD1 A:ASP61 4.1 25.3 1.0 CB A:ASP245 4.3 21.6 1.0 O A:HOH345 4.3 19.1 1.0 CA A:THR246 4.4 18.9 1.0 OE1 A:GLU28 4.4 28.5 1.0 O A:HOH560 4.4 33.7 1.0 OD2 A:ASP61 4.5 21.3 1.0 CB A:ASP243 4.6 26.1 1.0 O A:HOH448 4.6 40.5 1.0 O A:ASP243 4.7 24.5 1.0 CG A:GLU28 4.7 25.1 1.0 C A:ASP245 4.7 19.4 1.0 CG A:ASP61 4.7 21.0 1.0 CG2 A:THR246 4.8 18.6 1.0 CA A:ASP245 4.8 21.3 1.0 N A:ASP245 4.8 21.7 1.0 C A:ASP243 4.9 24.1 1.0 CA A:ASP243 5.0 24.8 1.0

Magnesium binding site 2 out of 2 in the Structure of Drag-Glnz Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Drag-Glnz Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg299 b:28.9 occ:1.00 OD1 A:ASP60 2.1 19.2 1.0 OD2 A:ASP245 2.1 34.6 1.0 O A:HOH345 2.3 19.1 1.0 OG1 A:THR59 2.4 16.5 1.0 OD1 A:ASP61 2.5 25.3 1.0 CG A:ASP60 3.3 19.7 1.0 CG A:ASP245 3.3 28.0 1.0 O A:HOH586 3.3 37.5 1.0 CB A:THR59 3.4 17.6 1.0 CG A:ASP61 3.7 21.0 1.0 MG A:MG298 3.7 37.5 1.0 OD2 A:ASP60 3.8 22.7 1.0 N A:ASP60 3.9 19.2 1.0 O A:HOH560 3.9 33.7 1.0 N A:ASP61 4.0 16.2 1.0 CB A:ASP245 4.0 21.6 1.0 OD1 A:ASP245 4.2 33.4 1.0 OD1 A:ASP21 4.2 18.9 1.0 CG2 A:THR59 4.3 20.7 1.0 O A:HOH565 4.3 42.0 1.0 OD2 A:ASP61 4.4 21.3 1.0 OE1 A:GLU28 4.5 28.5 1.0 CB A:ASP60 4.5 16.4 1.0 CA A:ASP60 4.5 18.5 1.0 C A:THR59 4.5 18.3 1.0 CA A:THR59 4.6 17.1 1.0 OE2 A:GLU28 4.6 32.4 1.0 CB A:ASP61 4.6 17.6 1.0 OG1 A:THR246 4.7 17.9 1.0 OD2 A:ASP97 4.7 23.7 1.0 C A:ASP60 4.7 16.8 1.0 CA A:ASP61 4.9 16.1 1.0 CD A:GLU28 4.9 29.6 1.0

C.Rajendran, E.C.M.Gerhardt, S.Bjelic, A.Gasperina, M.Scarduelli, F.O.Pedrosa, L.S.Chubatsu, M.Merrick, E.M.Souza, F.K.Winkler, L.F.Huergo, X.-D.Li. Crystal Structure of the Glnz-Drag Complex Reveals A Different Form of Pii-Target Interaction Proc.Natl.Acad.Sci.Usa V. 108 18972 2011.
ISSN: ISSN 0027-8424
PubMed: 22074780
DOI: 10.1073/PNAS.1108038108