Atomistry » Magnesium » PDB 3o1n-3oha » 3o8d
Atomistry »
  Magnesium »
    PDB 3o1n-3oha »
      3o8d »

Magnesium in PDB 3o8d: Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv

Enzymatic activity of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv

All present enzymatic activity of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv:
3.4.21.98; 3.6.1.15; 3.6.4.13;

Protein crystallography data

The structure of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv, PDB code: 3o8d was solved by T.C.Appleby, J.R.Somoza, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.02 / 2.05
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 89.749, 110.416, 144.374, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 23.3

Other elements in 3o8d:

The structure of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv also contains other interesting chemical elements:

Fluorine (F) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv (pdb code 3o8d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv, PDB code: 3o8d:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3o8d

Go back to Magnesium Binding Sites List in 3o8d
Magnesium binding site 1 out of 2 in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg850

b:18.4
occ:1.00
O1B A:ADP875 2.0 15.7 1.0
F1 A:BEF885 2.1 18.4 1.0
O A:HOH633 2.2 16.4 1.0
OG A:SER211 2.2 15.9 1.0
O A:HOH2 2.3 15.8 1.0
OE2 A:GLU291 2.3 15.6 1.0
PB A:ADP875 3.2 16.7 1.0
CD A:GLU291 3.2 18.6 1.0
BE A:BEF885 3.2 17.6 1.0
CB A:SER211 3.3 15.7 1.0
OE1 A:GLU291 3.4 17.2 1.0
O3B A:ADP875 3.5 16.8 1.0
OD2 A:ASP290 4.0 20.6 1.0
O2A A:ADP875 4.0 20.6 1.0
N A:SER211 4.0 14.4 1.0
OD1 A:ASP290 4.1 17.1 1.0
F3 A:BEF885 4.1 15.5 1.0
CA A:SER211 4.2 15.5 1.0
O3A A:ADP875 4.2 16.9 1.0
O2B A:ADP875 4.3 15.5 1.0
F2 A:BEF885 4.4 18.9 1.0
O A:HOH1 4.4 16.3 1.0
CG A:ASP290 4.4 20.6 1.0
CA A:GLY417 4.5 18.3 1.0
PA A:ADP875 4.5 19.7 1.0
CG A:GLU291 4.6 17.5 1.0
O A:GLY417 4.7 20.4 1.0
CB A:LYS210 4.7 17.2 1.0
CE A:LYS210 4.7 17.3 1.0
O A:HOH638 4.7 16.2 1.0
NH2 A:ARG467 4.8 17.8 1.0
C A:LYS210 4.8 16.2 1.0
O1A A:ADP875 4.8 20.2 1.0
ND2 A:ASN229 4.9 22.8 1.0

Magnesium binding site 2 out of 2 in 3o8d

Go back to Magnesium Binding Sites List in 3o8d
Magnesium binding site 2 out of 2 in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg850

b:20.4
occ:1.00
F1 B:BEF885 2.1 18.0 1.0
O1B B:ADP875 2.1 16.8 1.0
OG B:SER211 2.1 19.3 1.0
O B:HOH644 2.2 21.4 1.0
O B:HOH637 2.3 16.7 1.0
OE2 B:GLU291 2.4 22.1 1.0
CB B:SER211 3.1 20.7 1.0
PB B:ADP875 3.2 20.0 1.0
BE B:BEF885 3.2 20.0 1.0
CD B:GLU291 3.3 28.1 1.0
O3B B:ADP875 3.5 20.0 1.0
OE1 B:GLU291 3.5 24.2 1.0
OD2 B:ASP290 3.9 21.7 1.0
O2A B:ADP875 4.0 19.8 1.0
N B:SER211 4.1 17.1 1.0
F3 B:BEF885 4.1 24.4 1.0
OD1 B:ASP290 4.1 20.6 1.0
CA B:SER211 4.2 21.1 1.0
O B:HOH632 4.2 17.1 1.0
O2B B:ADP875 4.3 19.8 1.0
O3A B:ADP875 4.3 21.0 1.0
F2 B:BEF885 4.3 19.3 1.0
CG B:ASP290 4.4 22.7 1.0
CA B:GLY417 4.4 20.2 1.0
PA B:ADP875 4.5 19.5 1.0
O B:GLY417 4.7 21.0 1.0
CG B:GLU291 4.7 17.3 1.0
ND2 B:ASN229 4.7 24.7 1.0
CE B:LYS210 4.7 19.5 1.0
O B:HOH662 4.8 19.7 1.0
NH2 B:ARG467 4.8 21.0 1.0
CB B:LYS210 4.8 22.1 1.0
O1A B:ADP875 4.8 17.4 1.0
C B:LYS210 4.9 17.6 1.0
NZ B:LYS210 5.0 18.3 1.0

Reference:

T.C.Appleby, R.Anderson, O.Fedorova, A.M.Pyle, R.Wang, X.Liu, K.M.Brendza, J.R.Somoza. Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv. J.Mol.Biol. V. 405 1139 2011.
ISSN: ISSN 0022-2836
PubMed: 21145896
DOI: 10.1016/J.JMB.2010.11.034
Page generated: Thu Aug 15 08:13:13 2024

Last articles

Cl in 3QKX
Cl in 3QK9
Cl in 3QK8
Cl in 3QJ0
Cl in 3QK0
Cl in 3QIY
Cl in 3QIH
Cl in 3QIP
Cl in 3QI3
Cl in 3QHW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy