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Magnesium in PDB 3o8r: Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv

Enzymatic activity of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv

All present enzymatic activity of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv:
3.4.21.98; 3.6.1.15; 3.6.4.13;

Protein crystallography data

The structure of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv, PDB code: 3o8r was solved by T.C.Appleby, J.R.Somoza, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.68 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 91.033, 110.827, 141.979, 90.00, 90.00, 90.00
R / Rfree (%) 21.5 / 26.3

Other elements in 3o8r:

The structure of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Zinc (Zn) 2 atoms
Bromine (Br) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv (pdb code 3o8r). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv, PDB code: 3o8r:

Magnesium binding site 1 out of 1 in 3o8r

Go back to Magnesium Binding Sites List in 3o8r
Magnesium binding site 1 out of 1 in the Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg850

b:37.0
occ:1.00
 F1 A:BEF885 2.1 34.4 1.0
O A:HOH810 2.2 35.1 1.0
OG A:SER211 2.2 36.9 1.0
O A:HOH811 2.4 35.7 1.0
O1B A:ADP875 2.4 30.4 1.0
OE2 A:GLU291 2.6 35.5 1.0
BE A:BEF885 3.3 36.1 1.0
CB A:SER211 3.3 37.4 1.0
PB A:ADP875 3.4 34.4 1.0
O3B A:ADP875 3.5 36.5 1.0
CD A:GLU291 3.5 34.9 1.0
OE1 A:GLU291 3.6 35.0 1.0
O2A A:ADP875 3.9 36.4 1.0
N A:SER211 4.0 33.7 1.0
OD2 A:ASP290 4.0 30.8 1.0
OD1 A:ASP290 4.1 30.0 1.0
F3 A:BEF885 4.2 36.2 1.0
CA A:SER211 4.2 34.8 1.0
F2 A:BEF885 4.3 43.0 1.0
O3A A:ADP875 4.4 37.7 1.0
CG A:ASP290 4.4 29.2 1.0
PA A:ADP875 4.5 37.8 1.0
O2B A:ADP875 4.5 36.9 1.0
O A:HOH647 4.5 36.6 1.0
CE A:LYS210 4.5 36.0 1.0
CA A:GLY417 4.5 37.5 1.0
CB A:LYS210 4.6 33.2 1.0
O A:GLY417 4.7 38.1 1.0
O1A A:ADP875 4.7 34.0 1.0
O A:HOH633 4.8 27.7 1.0
CG A:GLU291 4.9 24.7 1.0
NH2 A:ARG467 4.9 40.6 1.0

Reference:

T.C.Appleby, R.Anderson, O.Fedorova, A.M.Pyle, R.Wang, X.Liu, K.M.Brendza, J.R.Somoza. Visualizing Atp-Dependent Rna Translocation By the NS3 Helicase From Hcv. J.Mol.Biol. V. 405 1139 2011.
ISSN: ISSN 0022-2836
PubMed: 21145896
DOI: 10.1016/J.JMB.2010.11.034
Page generated: Mon Dec 14 08:31:19 2020

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