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Magnesium in PDB 3olp: Crystal Structure of A Bacterial Phosphoglucomutase, An Enzyme Important in the Virulence of Multiple Human Pathogens

Enzymatic activity of Crystal Structure of A Bacterial Phosphoglucomutase, An Enzyme Important in the Virulence of Multiple Human Pathogens

All present enzymatic activity of Crystal Structure of A Bacterial Phosphoglucomutase, An Enzyme Important in the Virulence of Multiple Human Pathogens:
5.4.2.2;

Protein crystallography data

The structure of Crystal Structure of A Bacterial Phosphoglucomutase, An Enzyme Important in the Virulence of Multiple Human Pathogens, PDB code: 3olp was solved by L.J.Beamer, R.Mehra-Chaudhary, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.95
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 58.125, 85.125, 111.879, 90.00, 94.42, 90.00
R / Rfree (%) 16.6 / 19.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Bacterial Phosphoglucomutase, An Enzyme Important in the Virulence of Multiple Human Pathogens (pdb code 3olp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Bacterial Phosphoglucomutase, An Enzyme Important in the Virulence of Multiple Human Pathogens, PDB code: 3olp:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3olp

Go back to Magnesium Binding Sites List in 3olp
Magnesium binding site 1 out of 2 in the Crystal Structure of A Bacterial Phosphoglucomutase, An Enzyme Important in the Virulence of Multiple Human Pathogens


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Bacterial Phosphoglucomutase, An Enzyme Important in the Virulence of Multiple Human Pathogens within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg547

b:22.4
occ:1.00
OD2 A:ASP304 2.0 21.8 1.0
O A:HOH590 2.0 22.6 1.0
OD1 A:ASP308 2.0 22.5 1.0
OG A:SER146 2.1 21.7 1.0
OD1 A:ASP306 2.1 24.1 1.0
OD2 A:ASP306 2.4 26.4 1.0
CG A:ASP306 2.6 20.3 1.0
CG A:ASP304 2.9 20.9 1.0
CG A:ASP308 3.0 19.9 1.0
CB A:SER146 3.1 20.6 1.0
OD2 A:ASP308 3.4 21.8 1.0
OD1 A:ASP304 3.4 20.2 1.0
CA A:SER146 3.9 20.9 1.0
CB A:ASP306 4.1 18.7 1.0
CB A:ASP304 4.1 18.3 1.0
CG A:ARG309 4.2 21.0 1.0
NE A:ARG309 4.2 33.2 1.0
CB A:ASP308 4.4 18.8 1.0
N A:ASP308 4.4 17.7 1.0
N A:ARG309 4.5 18.3 1.0
CD A:ARG309 4.5 27.0 1.0
O A:HOH619 4.6 31.4 1.0
N A:ASP306 4.7 17.3 1.0
C A:SER146 4.7 21.7 1.0
CD2 A:HIS147 4.7 33.1 1.0
N A:HIS147 4.7 21.7 1.0
CB A:ARG309 4.8 19.4 1.0
CA A:ASP306 4.8 17.9 1.0
CA A:ASP308 4.8 18.5 1.0
N A:TYR307 4.9 17.4 1.0
C A:ASP308 4.9 18.8 1.0
C A:ASP306 5.0 17.4 1.0

Magnesium binding site 2 out of 2 in 3olp

Go back to Magnesium Binding Sites List in 3olp
Magnesium binding site 2 out of 2 in the Crystal Structure of A Bacterial Phosphoglucomutase, An Enzyme Important in the Virulence of Multiple Human Pathogens


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Bacterial Phosphoglucomutase, An Enzyme Important in the Virulence of Multiple Human Pathogens within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg547

b:27.2
occ:1.00
OD2 B:ASP304 2.0 22.5 1.0
OD1 B:ASP308 2.1 25.7 1.0
O B:HOH592 2.1 31.3 1.0
OD1 B:ASP306 2.1 28.8 1.0
OG B:SER146 2.2 24.5 1.0
OD2 B:ASP306 2.3 28.2 1.0
CG B:ASP306 2.5 24.4 1.0
CG B:ASP304 2.9 23.7 1.0
CG B:ASP308 3.0 25.0 1.0
CB B:SER146 3.2 24.3 1.0
OD2 B:ASP308 3.3 27.0 1.0
OD1 B:ASP304 3.4 24.6 1.0
CA B:SER146 3.9 24.0 1.0
CB B:ASP306 4.1 22.5 1.0
CB B:ASP304 4.1 21.5 1.0
NE B:ARG309 4.2 36.6 1.0
CG B:ARG309 4.2 25.5 1.0
CB B:ASP308 4.4 23.4 1.0
O B:HOH600 4.5 33.7 1.0
CD B:ARG309 4.5 30.4 1.0
N B:ASP308 4.5 22.6 1.0
C B:SER146 4.6 24.5 1.0
CD2 B:HIS147 4.6 35.3 1.0
N B:ARG309 4.6 22.5 1.0
N B:ASP306 4.7 21.0 1.0
N B:HIS147 4.7 24.5 1.0
CA B:ASP306 4.8 21.8 1.0
CB B:ARG309 4.8 22.4 1.0
CA B:ASP308 4.8 23.3 1.0
N B:TYR307 5.0 21.4 1.0
C B:ASP306 5.0 21.6 1.0

Reference:

R.Mehra-Chaudhary, J.Mick, J.J.Tanner, M.T.Henzl, L.J.Beamer. Crystal Structure of A Bacterial Phosphoglucomutase, An Enzyme Involved in the Virulence of Multiple Human Pathogens. Proteins V. 79 1215 2011.
ISSN: ISSN 0887-3585
PubMed: 21246636
DOI: 10.1002/PROT.22957
Page generated: Thu Aug 15 08:25:51 2024

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