Magnesium in PDB 3opx: Crystal Structure of Pyrimidine 5 -Nucleotidase SDT1 From Saccharomyces Cerevisiae Complexed with Uridine 5'-Monophosphate

The structure of Crystal Structure of Pyrimidine 5 -Nucleotidase SDT1 From Saccharomyces Cerevisiae Complexed with Uridine 5'-Monophosphate, PDB code: 3opx was solved by M.K.Teng, L.W.Niu, N.Shi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.20 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	41.198, 78.037, 82.789, 90.00, 90.00, 90.00
R / Rfree (%)	21.2 / 25.1

The binding sites of Magnesium atom in the Crystal Structure of Pyrimidine 5 -Nucleotidase SDT1 From Saccharomyces Cerevisiae Complexed with Uridine 5'-Monophosphate (pdb code 3opx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Pyrimidine 5 -Nucleotidase SDT1 From Saccharomyces Cerevisiae Complexed with Uridine 5'-Monophosphate, PDB code: 3opx:

Magnesium binding site 1 out of 1 in the Crystal Structure of Pyrimidine 5 -Nucleotidase SDT1 From Saccharomyces Cerevisiae Complexed with Uridine 5'-Monophosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pyrimidine 5 -Nucleotidase SDT1 From Saccharomyces Cerevisiae Complexed with Uridine 5'-Monophosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg264 b:16.1 occ:1.00 O2P A:U5P265 2.2 16.5 0.7 OD1 A:ASP203 2.3 20.0 1.0 O A:ASP38 2.3 15.3 1.0 O2P A:U5P265 2.4 15.8 0.3 O A:HOH304 2.5 29.3 1.0 O A:HOH294 2.6 19.4 1.0 CG A:ASP203 3.0 22.1 1.0 OD2 A:ASP203 3.1 23.6 1.0 C A:ASP38 3.4 14.1 1.0 P A:U5P265 3.7 14.5 0.7 P A:U5P265 3.8 17.7 0.3 CB A:ASP38 4.1 12.0 1.0 CA A:ASP38 4.1 14.0 1.0 OD1 A:ASP202 4.2 15.2 1.0 CB A:ASN39 4.3 15.1 1.0 N A:ASP38 4.3 11.3 1.0 O1P A:U5P265 4.3 12.2 0.3 O3P A:U5P265 4.3 11.6 0.7 O1P A:U5P265 4.4 12.9 0.7 O3P A:U5P265 4.4 11.9 0.3 CB A:ASP203 4.4 14.2 1.0 O A:HOH422 4.5 40.3 1.0 N A:ASN39 4.5 11.8 1.0 O A:HOH278 4.5 20.5 1.0 O5' A:U5P265 4.5 17.8 0.7 CB A:ALA36 4.6 12.1 1.0 C5' A:U5P265 4.6 23.0 0.7 SG A:CYS40 4.7 12.3 0.2 C5' A:U5P265 4.7 22.5 0.3 N A:ASP203 4.8 13.3 1.0 CA A:ASN39 4.8 12.5 1.0 O5' A:U5P265 4.8 16.1 0.3 C A:ASN39 4.9 15.3 1.0

N.Shi, M.K.Teng, L.W.Niu. Crystal Structure of Pyrimidine 5 -Nucleotidase SDT1 From Saccharomyces Cerevisiae Complexed with Uridine 5'-Monophosphate To Be Published.