Magnesium in PDB 3os1: Pfv Target Capture Complex (Tcc) at 2.97 A Resolution

The structure of Pfv Target Capture Complex (Tcc) at 2.97 A Resolution, PDB code: 3os1 was solved by G.N.Maertens, S.Hare, P.Cherepanov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.11 / 2.97
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	159.882, 159.882, 127.842, 90.00, 90.00, 90.00
R / Rfree (%)	23.1 / 26.4

The structure of Pfv Target Capture Complex (Tcc) at 2.97 A Resolution also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Magnesium atom in the Pfv Target Capture Complex (Tcc) at 2.97 A Resolution (pdb code 3os1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Pfv Target Capture Complex (Tcc) at 2.97 A Resolution, PDB code: 3os1:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Pfv Target Capture Complex (Tcc) at 2.97 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Pfv Target Capture Complex (Tcc) at 2.97 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg393 b:85.5 occ:1.00 OD1 B:ASP128 2.1 79.1 1.0 OD1 B:ASP185 3.1 77.8 1.0 CG B:ASP128 3.2 78.0 1.0 OD2 B:ASP128 3.5 78.9 1.0 O B:TYR129 3.6 79.8 1.0 N B:TYR129 3.7 77.9 1.0 CG B:ASP185 4.0 78.6 1.0 OD2 B:ASP185 4.2 80.3 1.0 CB B:TYR129 4.3 78.5 1.0 C B:TYR129 4.3 79.6 1.0 CA B:TYR129 4.3 78.8 1.0 CB B:ASP128 4.5 77.0 1.0 C B:ASP128 4.7 77.2 1.0 CA B:ASP128 4.8 76.9 1.0 CE2 B:PHE190 5.0 79.0 1.0

Magnesium binding site 2 out of 2 in the Pfv Target Capture Complex (Tcc) at 2.97 A Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Pfv Target Capture Complex (Tcc) at 2.97 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg394 b:64.1 occ:1.00 OP1 T:DC0 2.2 76.5 1.0 OD2 A:ASP128 2.2 67.6 1.0 OE1 A:GLU221 2.9 64.7 1.0 OE2 A:GLU221 2.9 65.8 1.0 CG A:ASP128 3.2 68.4 1.0 O5' T:DC0 3.2 77.8 1.0 P T:DC0 3.2 76.7 1.0 CD A:GLU221 3.3 65.1 1.0 C5' D:2DA17 3.4 75.9 1.0 O A:TYR129 3.4 69.6 1.0 OD1 A:ASP128 3.4 69.1 1.0 C5' T:DC0 3.5 77.4 1.0 ND2 A:ASN224 3.8 66.7 1.0 OP1 D:2DA17 4.1 69.5 1.0 C4' D:2DA17 4.2 78.4 1.0 OP2 T:DC0 4.2 75.3 1.0 C A:TYR129 4.3 69.5 1.0 O3' T:DG-1 4.4 75.3 1.0 O5' D:2DA17 4.5 72.2 1.0 CB A:ASP128 4.5 68.0 1.0 P D:2DA17 4.8 71.7 1.0 C4' T:DC0 4.9 76.0 1.0 CG A:GLU221 4.9 63.5 1.0 N A:TYR129 4.9 68.9 1.0 O4' D:2DA17 5.0 79.2 1.0 O3' D:DC16 5.0 70.7 1.0

G.N.Maertens, S.Hare, P.Cherepanov. The Mechanism of Retroviral Integration From X-Ray Structures of Its Key Intermediates Nature V. 468 326 2010.
ISSN: ISSN 0028-0836
PubMed: 21068843
DOI: 10.1038/NATURE09517