Magnesium in PDB 3osp: Structure of REV1

The structure of Structure of REV1, PDB code: 3osp was solved by D.T.Nair, A.K.Aggarwal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.50
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	180.021, 200.236, 55.725, 90.00, 90.00, 90.00
R / Rfree (%)	20.4 / 25.5

The binding sites of Magnesium atom in the Structure of REV1 (pdb code 3osp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of REV1, PDB code: 3osp:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of REV1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of REV1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg297 b:53.8 occ:1.00 OE2 A:GLU468 2.5 29.7 1.0 OD2 A:ASP362 2.5 39.5 1.0 O1A A:DCP739 2.6 28.0 1.0 OD2 A:ASP467 2.7 28.8 1.0 CG A:ASP467 3.5 24.7 1.0 OD1 A:ASP467 3.5 25.5 1.0 CD A:GLU468 3.5 30.2 1.0 MG A:MG298 3.5 21.5 1.0 PA A:DCP739 3.6 29.8 1.0 O5' A:DCP739 3.6 30.2 1.0 C3' P:DOC12 3.6 63.5 1.0 CG A:ASP362 3.7 33.2 1.0 CB A:GLU468 3.8 24.1 1.0 C5' A:DCP739 3.9 28.3 1.0 CG A:GLU468 4.1 26.0 1.0 O2A A:DCP739 4.2 32.8 1.0 OG A:SER465 4.3 28.6 1.0 OE1 A:GLU468 4.3 32.4 1.0 OD1 A:ASP362 4.3 35.2 1.0 O A:HOH753 4.4 45.9 1.0 C2' P:DOC12 4.4 63.3 1.0 CB A:SER465 4.6 27.5 1.0 O A:ASP467 4.6 24.4 1.0 C A:ASP467 4.7 23.5 1.0 CB A:ASP362 4.8 27.2 1.0 O2B A:DCP739 4.8 27.9 1.0 CB A:ASP467 4.9 23.2 1.0 C4' P:DOC12 4.9 63.4 1.0 CA A:GLU468 5.0 25.2 1.0 O3G A:DCP739 5.0 27.4 1.0

Magnesium binding site 2 out of 2 in the Structure of REV1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of REV1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg298 b:21.5 occ:1.00 O2B A:DCP739 2.2 27.9 1.0 OD1 A:ASP362 2.2 35.2 1.0 O A:PHE363 2.2 25.6 1.0 OD1 A:ASP467 2.5 25.5 1.0 O1A A:DCP739 2.5 28.0 1.0 O3G A:DCP739 2.5 27.4 1.0 OD2 A:ASP362 2.8 39.5 1.0 CG A:ASP362 2.8 33.2 1.0 C A:PHE363 3.4 26.6 1.0 PB A:DCP739 3.5 26.6 1.0 MG A:MG297 3.5 53.8 1.0 CG A:ASP467 3.6 24.7 1.0 PA A:DCP739 3.6 29.8 1.0 PG A:DCP739 3.7 27.6 1.0 NZ A:LYS525 3.9 37.6 1.0 N A:PHE363 4.0 27.0 1.0 O3A A:DCP739 4.0 29.0 1.0 O3B A:DCP739 4.0 30.0 1.0 O A:HOH753 4.0 45.9 1.0 OD2 A:ASP467 4.1 28.8 1.0 C5' A:DCP739 4.1 28.3 1.0 CA A:PHE363 4.2 26.2 1.0 O2G A:DCP739 4.2 28.2 1.0 O5' A:DCP739 4.3 30.2 1.0 CB A:ASP362 4.3 27.2 1.0 C A:ASP362 4.3 27.4 1.0 CB A:PHE363 4.4 26.7 1.0 N A:ASP364 4.4 26.4 1.0 N A:CYS365 4.6 25.6 1.0 CE A:LYS525 4.6 33.1 1.0 CB A:PHE366 4.6 24.5 1.0 N A:PHE366 4.7 24.3 1.0 CA A:ASP364 4.7 26.7 1.0 O A:ASP467 4.7 24.4 1.0 O2A A:DCP739 4.7 32.8 1.0 CB A:ASP467 4.8 23.2 1.0 CA A:ASP362 4.8 27.2 1.0 O1B A:DCP739 4.8 28.4 1.0 C A:ASP364 4.8 26.0 1.0 O A:ASP362 4.8 29.3 1.0

D.T.Nair, R.E.Johnson, L.Prakash, S.Prakash, A.K.Aggarwal. Dna Synthesis Across An Abasic Lesion By Yeast REV1 Dna Polymerase. J.Mol.Biol. V. 406 18 2011.
ISSN: ISSN 0022-2836
PubMed: 21167175
DOI: 10.1016/J.JMB.2010.12.016