Magnesium in PDB 3ow2: Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

The structure of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit, PDB code: 3ow2 was solved by Z.F.Kanyo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	50.00 / 2.70
*Space group*	C 2 2 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	211.853, 298.000, 574.985, 90.00, 90.00, 90.00
*R / R_free (%)*	n/a / n/a

Other elements in 3ow2:

The structure of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit also contains other interesting chemical elements:

Fluorine	(F)	1 atom
Strontium	(Sr)	98 atoms
Potassium	(K)	1 atom
Cadmium	(Cd)	4 atoms
Chlorine	(Cl)	13 atoms
Sodium	(Na)	26 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 61;

Binding sites:

The binding sites of Magnesium atom in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit (pdb code 3ow2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 61 binding sites of Magnesium where determined in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit, PDB code: 3ow2:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 61 in 3ow2

Magnesium binding site 1 out of 61 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
0:Mg8001 b:27.4 occ:1.00	OP2	0:C2533	2.4	32.2	1.0
	OP2	0:C2534	2.4	34.5	1.0
	OP2	0:A2483	2.5	32.7	1.0
	O3'	0:G2482	3.3	30.7	1.0
	P	0:A2483	3.6	29.9	1.0
	O2'	0:A2532	3.6	34.5	1.0
	P	0:C2533	3.8	31.0	1.0
	O2'	0:G2482	3.8	30.7	1.0
	P	0:C2534	3.9	33.9	1.0
	O3'	0:A2532	4.1	30.9	1.0
	OP2	0:U2484	4.3	36.9	1.0
	O5'	0:C2533	4.5	29.7	1.0
	OP1	0:C2534	4.6	36.4	1.0
	C3'	0:G2482	4.6	29.0	1.0
	OP1	0:A2483	4.6	33.0	1.0
	O5'	0:A2483	4.6	29.3	1.0
	C5'	0:A2483	4.7	27.8	1.0
	C2'	0:G2482	4.7	28.9	1.0
	O5'	0:C2534	4.7	31.6	1.0
	C2'	0:A2532	4.8	32.0	1.0
	O3'	0:C2533	4.8	30.9	1.0
	C1'	0:G2482	4.8	30.5	1.0
	OP2	0:A2485	4.8	34.4	1.0
	C3'	0:C2533	4.9	27.8	1.0
	OP1	0:C2533	5.0	30.7	1.0
	C3'	0:A2532	5.0	31.4	1.0

Magnesium binding site 2 out of 61 in 3ow2

Magnesium binding site 2 out of 61 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
0:Mg8002 b:57.0 occ:1.00	OP1	0:G2537	3.0	31.2	1.0
	OP2	0:G2481	3.0	24.8	1.0
	O5'	0:G2481	3.8	25.6	1.0
	P	0:G2481	3.8	26.9	1.0
	C3'	0:C2536	3.8	27.4	1.0
	OP2	0:G2482	3.8	28.6	1.0
	O5'	0:C2536	4.0	27.9	1.0
	OP1	0:C2536	4.2	27.8	1.0
	P	0:G2537	4.3	27.5	1.0
	OP1	0:G2481	4.3	24.8	1.0
	C8	0:G2481	4.4	27.8	1.0
	C2'	0:C2536	4.4	25.9	1.0
	P	0:C2536	4.4	29.4	1.0
	OP2	0:C2536	4.5	29.5	1.0
	O3'	0:C2536	4.6	29.3	1.0
	N7	0:G2481	4.6	25.7	1.0
	C5'	0:C2536	4.8	26.6	1.0
	C5'	0:G2482	4.8	28.8	1.0
	C4'	0:C2536	4.8	26.7	1.0
	C8	0:G2537	4.9	30.2	1.0
	C3'	0:G2481	4.9	27.1	1.0
	N7	0:G2537	5.0	30.4	1.0
	OP2	0:G2537	5.0	29.1	1.0

Magnesium binding site 3 out of 61 in 3ow2

Magnesium binding site 3 out of 61 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
0:Mg8003 b:44.0 occ:1.00	OP1	0:A2624	2.4	26.2	1.0
	OP2	0:A876	2.4	26.7	1.0
	OP2	0:G877	2.5	25.7	1.0
	P	0:A876	3.7	24.1	1.0
	P	0:G877	3.8	23.6	1.0
	P	0:A2624	3.8	22.6	1.0
	OD1	A:ASN195	4.0	22.9	1.0
	O	A:ALA193	4.0	23.2	1.0
	O3'	0:A875	4.1	24.0	1.0
	O5'	0:A876	4.3	24.7	1.0
	OP1	0:G877	4.3	31.4	1.0
	O3'	0:G2623	4.5	24.1	1.0
	OP2	0:A2624	4.6	26.6	1.0
	O3'	0:A876	4.7	26.1	1.0
	O5'	0:A2624	4.8	24.5	1.0
	C5'	0:A876	4.8	26.5	1.0
	CG	A:ASN195	4.9	19.1	1.0
	O5'	0:G877	4.9	22.9	1.0
	C	A:ALA193	4.9	23.9	1.0
	C5'	0:A2624	4.9	25.9	1.0
	OP1	0:A876	5.0	25.1	1.0

Magnesium binding site 4 out of 61 in 3ow2

Magnesium binding site 4 out of 61 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
0:Mg8004 b:38.5 occ:1.00	OP1	0:A459	2.4	32.4	1.0
	O6	0:G456	2.4	35.9	1.0
	C6	0:G456	3.5	32.4	1.0
	P	0:A459	3.8	26.7	1.0
	OP2	0:A455	4.0	30.6	1.0
	N7	0:G456	4.1	31.7	1.0
	C5	0:G456	4.1	32.0	1.0
	N7	0:A455	4.2	26.6	1.0
	CE	C:LYS85	4.2	25.3	1.0
	OP2	0:A459	4.4	28.5	1.0
	CD	C:LYS85	4.4	24.7	1.0
	C5'	0:U454	4.4	27.9	1.0
	OP1	0:A477	4.6	31.6	1.0
	O5'	0:A459	4.6	27.1	1.0
	NZ	C:LYS85	4.6	27.3	1.0
	N1	0:G456	4.6	32.4	1.0
	C4'	0:U454	4.8	29.2	1.0
	OP1	0:A460	4.8	33.8	1.0
	C5'	0:A459	4.8	28.1	1.0
	O3'	0:G458	4.8	28.8	1.0
	C8	0:A455	4.8	27.1	1.0

Magnesium binding site 5 out of 61 in 3ow2

Magnesium binding site 5 out of 61 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
0:Mg8005 b:32.2 occ:1.00	OP1	0:A1836	2.2	24.1	1.0
	OP2	0:A1839	2.3	24.7	1.0
	OP1	0:U1838	2.3	23.3	1.0
	P	0:A1836	3.5	19.0	1.0
	P	0:A1839	3.7	19.8	1.0
	P	0:U1838	3.8	21.9	1.0
	OP2	0:G1837	3.9	24.4	1.0
	O5'	0:A1836	3.9	24.4	1.0
	C3'	0:G1837	4.2	24.6	1.0
	OP1	0:A1839	4.3	27.2	1.0
	OP2	0:A1836	4.4	21.9	1.0
	O5'	0:U1838	4.5	20.1	1.0
	O3'	0:G1837	4.5	22.5	1.0
	O3'	0:U1838	4.5	22.9	1.0
	C5'	0:U1838	4.6	19.9	1.0
	O3'	0:U1835	4.6	21.8	1.0
	O5'	0:A1839	4.6	20.5	1.0
	C2'	0:U1835	4.6	23.1	1.0
	C3'	0:U1835	4.6	22.1	1.0
	C3'	0:U1838	4.8	21.8	1.0
	OP2	0:U1838	4.8	20.2	1.0

Magnesium binding site 6 out of 61 in 3ow2

Magnesium binding site 6 out of 61 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
0:Mg8006 b:26.4 occ:1.00	OP1	0:U919	2.2	32.7	1.0
	OP1	0:C2464	2.3	29.5	1.0
	OP1	0:A2465	2.5	33.3	1.0
	P	0:U919	3.1	30.7	1.0
	OP2	0:U919	3.3	32.8	1.0
	P	0:C2464	3.7	26.0	1.0
	P	0:A2465	3.8	32.2	1.0
	O5'	0:U919	3.8	29.0	1.0
	O5'	0:C2464	4.3	27.5	1.0
	O5'	0:A2465	4.3	31.9	1.0
	OP2	0:A2465	4.4	33.3	1.0
	OP2	0:C2464	4.4	27.2	1.0
	OP1	0:G2466	4.4	29.9	1.0
	C5'	0:C2464	4.4	27.7	1.0
	C5'	0:U919	4.4	27.6	1.0
	O3'	0:G918	4.5	28.9	1.0
	O3'	0:A2463	4.7	27.6	1.0
	C3'	0:A2465	4.7	29.8	1.0
	C2'	0:A2465	5.0	30.2	1.0
	O3'	0:C2464	5.0	31.5	1.0

Magnesium binding site 7 out of 61 in 3ow2

Magnesium binding site 7 out of 61 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
0:Mg8007 b:28.3 occ:1.00	OP1	0:A2612	2.4	29.5	1.0
	OP1	0:G2611	2.4	33.7	1.0
	O3'	0:U2610	3.5	31.0	1.0
	P	0:G2611	3.6	32.9	1.0
	P	0:A2612	3.8	25.5	1.0
	OP1	0:G2094	3.9	25.8	1.0
	OP2	0:G2094	4.0	26.4	1.0
	C5'	0:G2611	4.4	28.3	1.0
	OP2	0:G2093	4.4	24.7	1.0
	P	0:G2094	4.4	24.4	1.0
	O3'	0:G2611	4.4	26.7	1.0
	O5'	0:G2611	4.5	31.0	1.0
	OP2	0:A2612	4.5	29.0	1.0
	C3'	0:G2611	4.6	24.4	1.0
	C3'	0:U2610	4.6	28.1	1.0
	C4'	0:U2610	4.6	27.2	1.0
	OP2	0:G2611	4.7	32.1	1.0
	O5'	0:A2612	4.9	29.8	1.0
	C5'	0:U2610	4.9	26.0	1.0

Magnesium binding site 8 out of 61 in 3ow2

Magnesium binding site 8 out of 61 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
0:Mg8008 b:35.9 occ:1.00	OP1	0:G28	2.4	33.3	1.0
	OP2	0:G1344	3.7	34.0	1.0
	OP1	0:U1304	3.7	32.2	1.0
	P	0:G28	3.8	28.9	1.0
	OP1	0:C1343	4.1	32.3	1.0
	OP2	0:C1305	4.1	33.8	1.0
	OP2	0:G28	4.4	31.8	1.0
	O3'	0:U27	4.4	27.2	1.0
	OP1	0:C1305	4.4	32.0	1.0
	P	0:G1344	4.8	32.9	1.0
	P	0:C1305	4.8	31.3	1.0
	CA	C:GLY177	4.8	34.4	1.0
	O5'	0:G28	4.9	30.0	1.0
	C5'	0:U1304	5.0	26.7	1.0

Magnesium binding site 9 out of 61 in 3ow2

Magnesium binding site 9 out of 61 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
0:Mg8009 b:35.4 occ:1.00	OP1	0:G877	2.4	31.4	1.0
	OP1	0:G2623	2.4	28.0	1.0
	OP2	0:A2624	3.5	26.6	1.0
	P	0:G877	3.7	23.6	1.0
	P	0:G2623	3.8	22.1	1.0
	OP2	0:G877	4.3	25.7	1.0
	OD1	A:ASN195	4.3	22.9	1.0
	P	0:A2624	4.4	22.6	1.0
	OP2	0:C2475	4.5	33.3	1.0
	O5'	0:G877	4.5	22.9	1.0
	O6	0:G885	4.5	22.6	1.0
	O5'	0:G2623	4.5	24.2	1.0
	OP1	0:A2624	4.5	26.2	1.0
	OP2	0:G2623	4.6	27.9	1.0
	C5'	0:G877	4.7	22.7	1.0
	C5'	0:G2623	4.7	24.3	1.0
	O3'	0:G2623	4.7	24.1	1.0
	O3'	0:A876	4.8	26.1	1.0
	O3'	0:A2622	4.8	24.1	1.0

Magnesium binding site 10 out of 61 in 3ow2

Magnesium binding site 10 out of 61 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
0:Mg8010 b:42.1 occ:1.00	OP1	0:A844	2.3	28.7	1.0
	OP1	0:A1689	2.4	27.1	1.0
	P	0:A1689	3.2	25.3	1.0
	OP2	0:A1689	3.3	26.1	1.0
	N7	0:A844	3.5	29.6	1.0
	N1	0:A882	3.6	40.7	1.0
	N6	0:A882	3.7	45.0	1.0
	P	0:A844	3.7	26.9	1.0
	C8	0:A844	3.9	28.0	1.0
	O3'	0:G1688	4.0	24.5	1.0
	N7	0:A1689	4.0	23.2	1.0
	O2'	0:G1688	4.1	27.8	1.0
	C6	0:A882	4.1	41.9	1.0
	O5'	0:A844	4.2	25.3	1.0
	C8	0:A1689	4.3	21.4	1.0
	CA	Q:GLY131	4.4	32.0	1.0
	O3'	0:A843	4.5	28.5	1.0
	C2'	0:G1688	4.5	25.2	1.0
	O5'	0:A1689	4.6	25.1	1.0
	C2	0:A882	4.7	40.9	1.0
	OG1	Z:THR5	4.7	23.2	1.0
	C5	0:A844	4.7	31.1	1.0
	N	Q:GLY131	4.8	31.5	1.0
	OP2	0:A844	4.8	27.0	1.0
	C3'	0:G1688	4.9	23.9	1.0

Magnesium in PDB 3ow2: Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Protein crystallography data

Other elements in 3ow2:

Magnesium Binding Sites:

Pages:

Binding sites:

Magnesium binding site 1 out of 61 in 3ow2

Magnesium binding site 2 out of 61 in 3ow2

Magnesium binding site 3 out of 61 in 3ow2

Magnesium binding site 4 out of 61 in 3ow2

Magnesium binding site 5 out of 61 in 3ow2

Magnesium binding site 6 out of 61 in 3ow2

Magnesium binding site 7 out of 61 in 3ow2

Magnesium binding site 8 out of 61 in 3ow2

Magnesium binding site 9 out of 61 in 3ow2

Magnesium binding site 10 out of 61 in 3ow2

Reference:

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