Magnesium in PDB 3p1g: Crystal Structure of the Xenotropic Murine Leukemia Virus-Related Virus (Xmrv) Rnase H Domain

The structure of Crystal Structure of the Xenotropic Murine Leukemia Virus-Related Virus (Xmrv) Rnase H Domain, PDB code: 3p1g was solved by K.A.Kirby, S.G.Sarafianos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.53 / 1.50
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	37.530, 37.530, 100.720, 90.00, 90.00, 90.00
R / Rfree (%)	16.1 / 18.2

The binding sites of Magnesium atom in the Crystal Structure of the Xenotropic Murine Leukemia Virus-Related Virus (Xmrv) Rnase H Domain (pdb code 3p1g). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Xenotropic Murine Leukemia Virus-Related Virus (Xmrv) Rnase H Domain, PDB code: 3p1g:

Magnesium binding site 1 out of 1 in the Crystal Structure of the Xenotropic Murine Leukemia Virus-Related Virus (Xmrv) Rnase H Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Xenotropic Murine Leukemia Virus-Related Virus (Xmrv) Rnase H Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg163 b:55.6 occ:1.00 OE2 A:GLU562 2.3 29.1 0.8 OD1 A:ASP524 2.3 28.4 1.0 OD1 A:ASP583 2.4 37.8 1.0 O A:HOH115 2.5 43.7 1.0 O A:HOH34 2.6 31.6 1.0 OD2 A:ASP583 2.7 36.8 1.0 CG A:ASP583 2.8 29.5 1.0 CD A:GLU562 3.2 25.4 0.8 OE1 A:GLU562 3.5 25.8 0.8 CG A:ASP524 3.5 25.7 1.0 O A:HOH110 3.6 42.6 1.0 OD1 A:ASP653 4.1 25.2 0.4 CB A:ASP583 4.2 22.4 1.0 CB A:ASP524 4.2 18.6 1.0 O A:HOH65 4.2 45.4 1.0 O A:HOH113 4.2 46.6 1.0 O A:GLY525 4.3 24.1 1.0 CA A:ASP524 4.3 16.4 1.0 N A:GLY525 4.3 17.4 1.0 OD2 A:ASP524 4.5 28.8 1.0 N A:SER584 4.5 17.2 1.0 CG A:GLU562 4.6 22.1 0.8 C A:ASP583 4.6 20.6 1.0 N A:ASP583 4.6 19.9 1.0 CG A:GLU562 4.6 20.7 0.2 CA A:ASP583 4.6 19.4 1.0 OE2 A:GLU562 4.8 24.3 0.2 O A:THR523 4.8 19.8 1.0 C A:ASP524 4.9 16.6 1.0

K.A.Kirby, B.Marchand, Y.T.Ong, T.P.Ndongwe, A.Hachiya, E.Michailidis, M.D.Leslie, D.V.Sietsema, T.L.Fetterly, C.A.Dorst, K.Singh, Z.Wang, M.A.Parniak, S.G.Sarafianos. Structural and Inhibition Studies of the Rnase H Function of Xenotropic Murine Leukemia Virus-Related Virus Reverse Transcriptase. Antimicrob.Agents Chemother. V. 56 2048 2012.
ISSN: ISSN 0066-4804
PubMed: 22252812
DOI: 10.1128/AAC.06000-11