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Magnesium in PDB 3peg: Crystal Structure of Neurofibromins SEC14-pH Module Containing A Patient Derived Duplication (Td)

Protein crystallography data

The structure of Crystal Structure of Neurofibromins SEC14-pH Module Containing A Patient Derived Duplication (Td), PDB code: 3peg was solved by S.Welti, S.Kuen, I.D'angelo, K.Scheffzek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.57 / 2.52
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 104.600, 104.600, 116.300, 90.00, 90.00, 120.00
R / Rfree (%) 22.3 / 26.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Neurofibromins SEC14-pH Module Containing A Patient Derived Duplication (Td) (pdb code 3peg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Neurofibromins SEC14-pH Module Containing A Patient Derived Duplication (Td), PDB code: 3peg:

Magnesium binding site 1 out of 1 in 3peg

Go back to Magnesium Binding Sites List in 3peg
Magnesium binding site 1 out of 1 in the Crystal Structure of Neurofibromins SEC14-pH Module Containing A Patient Derived Duplication (Td)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Neurofibromins SEC14-pH Module Containing A Patient Derived Duplication (Td) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg54

b:48.0
occ:1.00
OG A:SER1630 3.0 63.6 1.0
ND2 A:ASN1784 3.3 85.9 1.0
CD A:PRO1629 3.6 53.2 1.0
N A:SER1630 3.7 55.2 1.0
CB A:SER1630 3.7 57.8 1.0
N A:PRO1629 3.9 50.9 1.0
CA A:GLY1628 4.1 43.7 1.0
C A:GLY1628 4.1 47.7 1.0
CA A:SER1630 4.3 56.0 1.0
CG A:ASN1784 4.4 83.2 1.0
CB A:ASN1784 4.4 79.1 1.0
CG A:PRO1629 4.5 54.0 1.0
CB A:PRO1629 4.6 46.9 1.0
C A:PRO1629 4.6 53.0 1.0
CA A:PRO1629 4.6 48.6 1.0
N A:GLY1628 4.8 45.1 1.0
OE2 A:GLU1766 4.9 68.7 1.0
O A:GLY1628 4.9 45.3 1.0
OD1 A:ASN1631 5.0 43.6 1.0

Reference:

S.Welti, S.Kuhn, I.D'angelo, B.Brugger, D.Kaufmann, K.Scheffzek. Structural and Biochemical Consequences of NF1 Associated Nontruncating Mutations in the SEC14-pH Module of Neurofibromin. Hum.Mutat. V. 32 191 2011.
ISSN: ISSN 1059-7794
PubMed: 21089070
DOI: 10.1002/HUMU.21405
Page generated: Mon Dec 14 08:38:59 2020

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