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Magnesium in PDB 3pf4: Crystal Structure of Bs-Cspb in Complex with R(Gucuuua)

Protein crystallography data

The structure of Crystal Structure of Bs-Cspb in Complex with R(Gucuuua), PDB code: 3pf4 was solved by R.Sachs, K.E.A.Max, U.Heinemann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.02 / 1.38
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.275, 50.512, 57.802, 90.00, 90.00, 90.00
R / Rfree (%) 15.4 / 19.4

Other elements in 3pf4:

The structure of Crystal Structure of Bs-Cspb in Complex with R(Gucuuua) also contains other interesting chemical elements:

Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Bs-Cspb in Complex with R(Gucuuua) (pdb code 3pf4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Bs-Cspb in Complex with R(Gucuuua), PDB code: 3pf4:

Magnesium binding site 1 out of 1 in 3pf4

Go back to Magnesium Binding Sites List in 3pf4
Magnesium binding site 1 out of 1 in the Crystal Structure of Bs-Cspb in Complex with R(Gucuuua)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Bs-Cspb in Complex with R(Gucuuua) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg69

b:26.9
occ:1.00
O A:HOH160 2.0 27.7 1.0
O A:HOH115 2.0 30.3 1.0
O A:HOH127 2.0 25.9 1.0
O A:HOH122 2.1 31.5 1.0
O A:HOH92 2.2 26.9 1.0
O A:HOH131 2.2 27.9 1.0
O A:HOH215 4.2 41.2 1.0
OE1 A:GLU19 4.2 30.0 1.0
O A:HOH233 4.3 37.5 1.0
O A:HOH83 4.3 20.8 1.0
OD1 A:ASP25 4.3 18.8 1.0
NZ A:LYS7 4.5 22.3 1.0
CE A:LYS7 4.7 20.4 1.0
CB A:GLU19 5.0 20.1 1.0

Reference:

R.Sachs, K.E.Max, U.Heinemann, J.Balbach. Rna Single Strands Bind to A Conserved Surface of the Major Cold Shock Protein in Crystals and Solution. Rna V. 18 65 2012.
ISSN: ISSN 1355-8382
PubMed: 22128343
DOI: 10.1261/RNA.02809212
Page generated: Mon Dec 14 08:39:03 2020

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