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Magnesium in PDB 3pf5: Crystal Structure of Bs-Cspb in Complex with RU6

Protein crystallography data

The structure of Crystal Structure of Bs-Cspb in Complex with RU6, PDB code: 3pf5 was solved by R.Sachs, K.E.A.Max, U.Heinemann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.46 / 1.68
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.038, 49.769, 57.380, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 23.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Bs-Cspb in Complex with RU6 (pdb code 3pf5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Bs-Cspb in Complex with RU6, PDB code: 3pf5:

Magnesium binding site 1 out of 1 in 3pf5

Go back to Magnesium Binding Sites List in 3pf5
Magnesium binding site 1 out of 1 in the Crystal Structure of Bs-Cspb in Complex with RU6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Bs-Cspb in Complex with RU6 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg68

b:28.2
occ:1.00
O A:HOH89 2.0 23.8 1.0
O A:HOH93 2.0 31.6 1.0
O A:HOH170 2.0 34.1 1.0
O A:HOH87 2.1 30.0 1.0
O A:HOH88 2.2 33.6 1.0
O A:HOH161 2.2 34.5 1.0
O A:HOH185 4.0 39.4 1.0
O A:HOH154 4.0 41.0 1.0
O A:HOH92 4.1 28.8 1.0
OD1 A:ASP25 4.2 20.4 1.0
NZ A:LYS7 4.3 26.5 1.0
O A:HOH90 4.4 22.1 1.0
OE1 A:GLU19 4.4 32.8 1.0
O A:HOH186 4.5 45.1 1.0
CE A:LYS7 4.7 26.9 1.0
CB A:GLU19 5.0 24.7 1.0

Reference:

R.Sachs, K.E.Max, U.Heinemann, J.Balbach. Rna Single Strands Bind to A Conserved Surface of the Major Cold Shock Protein in Crystals and Solution. Rna V. 18 65 2012.
ISSN: ISSN 1355-8382
PubMed: 22128343
DOI: 10.1261/RNA.02809212
Page generated: Mon Dec 14 08:39:05 2020

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