Magnesium in PDB 3pgk: The Structure of Yeast Phosphoglycerate Kinase at 0.25 Nm Resolution

Enzymatic activity of The Structure of Yeast Phosphoglycerate Kinase at 0.25 Nm Resolution

All present enzymatic activity of The Structure of Yeast Phosphoglycerate Kinase at 0.25 Nm Resolution:
2.7.2.3;

Protein crystallography data

The structure of The Structure of Yeast Phosphoglycerate Kinase at 0.25 Nm Resolution, PDB code: 3pgk was solved by P.J.Shaw, N.P.Walker, H.C.Watson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 126.600, 54.400, 93.000, 90.00, 134.40, 90.00
R / Rfree (%) n/a / n/a

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Structure of Yeast Phosphoglycerate Kinase at 0.25 Nm Resolution (pdb code 3pgk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Structure of Yeast Phosphoglycerate Kinase at 0.25 Nm Resolution, PDB code: 3pgk:

Magnesium binding site 1 out of 1 in 3pgk

Go back to Magnesium Binding Sites List in 3pgk
Magnesium binding site 1 out of 1 in the The Structure of Yeast Phosphoglycerate Kinase at 0.25 Nm Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of Yeast Phosphoglycerate Kinase at 0.25 Nm Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg416

b:0.0
occ:1.00
OD1 A:ASP372 2.3 0.0 1.0
O2G A:ATP417 2.4 0.0 1.0
O1G A:ATP417 2.4 0.0 1.0
PG A:ATP417 2.7 0.0 1.0
O3G A:ATP417 3.0 0.0 1.0
CG A:ASP372 3.1 0.0 1.0
OD2 A:ASP372 3.2 0.0 1.0
O3B A:ATP417 4.3 0.0 1.0
N A:ASP372 4.4 0.0 1.0
CB A:ASP372 4.4 0.0 1.0
CA A:ASP372 4.7 0.0 1.0
O1A A:ATP417 4.8 0.0 1.0
O2 A:3PG418 4.9 0.0 1.0

Reference:

H.C.Watson, N.P.Walker, P.J.Shaw, T.N.Bryant, P.L.Wendell, L.A.Fothergill, R.E.Perkins, S.C.Conroy, M.J.Dobson, M.F.Tuite. Sequence and Structure of Yeast Phosphoglycerate Kinase. Embo J. V. 1 1635 1982.
ISSN: ISSN 0261-4189
PubMed: 6765200
Page generated: Mon Dec 14 08:39:11 2020

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