Magnesium in PDB 3pt1: Structure of DUF89 From Saccharomyces Cerevisiae Co-Crystallized with F6P.

The structure of Structure of DUF89 From Saccharomyces Cerevisiae Co-Crystallized with F6P., PDB code: 3pt1 was solved by P.Petit, X.Xu, H.Cui, A.Savchenko, A.F.Yakunin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.89 / 1.77
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	53.320, 108.650, 88.080, 90.00, 96.84, 90.00
R / Rfree (%)	15.6 / 19.2

The binding sites of Magnesium atom in the Structure of DUF89 From Saccharomyces Cerevisiae Co-Crystallized with F6P. (pdb code 3pt1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of DUF89 From Saccharomyces Cerevisiae Co-Crystallized with F6P., PDB code: 3pt1:

Magnesium binding site 1 out of 1 in the Structure of DUF89 From Saccharomyces Cerevisiae Co-Crystallized with F6P.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of DUF89 From Saccharomyces Cerevisiae Co-Crystallized with F6P. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:13.4 occ:1.00 OD1 A:ASP292 2.1 13.6 1.0 OD1 A:ASP254 2.2 12.9 1.0 OD1 A:ASN255 2.2 13.7 1.0 O A:HOH590 2.2 10.3 1.0 O A:HOH589 2.2 12.1 1.0 O1P A:F6P1001 2.2 12.6 0.5 O2P A:F6P1001 2.3 12.7 0.5 CG A:ASP292 3.1 15.0 1.0 CG A:ASP254 3.2 16.1 1.0 CG A:ASN255 3.2 23.2 1.0 P A:F6P1001 3.4 16.5 0.5 O2P A:F6P1001 3.5 5.7 0.5 OD2 A:ASP292 3.5 13.1 1.0 OD2 A:ASP254 3.6 19.2 1.0 P A:F6P1001 3.7 22.8 0.5 ND2 A:ASN255 3.8 34.3 1.0 O1P A:F6P1001 4.1 23.3 0.5 N A:ASN255 4.3 9.2 1.0 C A:ASP254 4.3 11.0 1.0 O6 A:F6P1001 4.4 17.9 0.5 O A:MSE289 4.4 13.9 1.0 CB A:ASP292 4.4 13.3 1.0 O A:HOH565 4.4 47.5 1.0 CB A:ASN255 4.4 12.1 1.0 CB A:MSE289 4.4 10.2 1.0 C6 A:F6P1001 4.4 19.3 0.5 CB A:ASP254 4.4 12.3 1.0 O3P A:F6P1001 4.5 15.4 0.5 C6 A:F6P1001 4.5 19.2 0.5 CA A:ASN255 4.5 10.5 1.0 O6 A:F6P1001 4.5 21.6 0.5 N A:ASP292 4.5 8.9 1.0 CA A:ASP292 4.6 11.5 1.0 CA A:ASP254 4.6 9.7 1.0 O3P A:F6P1001 4.6 24.2 0.5 O A:ASP254 4.6 12.8 1.0 O A:HOH492 4.7 12.2 1.0 C A:SER291 4.9 10.9 1.0 O A:HOH499 4.9 10.4 1.0

G.Brown, X.Xu, P.Petit, H.Cui, R.Flick, M.Cuff, A.Savchenko, A.F.Yakunin. Structure and Activity of A DUF89 Protein From Saccharomyces Cerevisiae Revealed A Novel Family of Carbohydrate Phosphatases To Be Published.