Atomistry » Magnesium » PDB 3py8-3q86 » 3q0c
Atomistry »
  Magnesium »
    PDB 3py8-3q86 »
      3q0c »

Magnesium in PDB 3q0c: Crystal Structure of SUVH5 Sra-Fully Methylated Cg Dna Complex in Space Group P6122

Enzymatic activity of Crystal Structure of SUVH5 Sra-Fully Methylated Cg Dna Complex in Space Group P6122

All present enzymatic activity of Crystal Structure of SUVH5 Sra-Fully Methylated Cg Dna Complex in Space Group P6122:
2.1.1.43;

Protein crystallography data

The structure of Crystal Structure of SUVH5 Sra-Fully Methylated Cg Dna Complex in Space Group P6122, PDB code: 3q0c was solved by R.Eerappa, D.K.Simanshu, D.J.Patel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.85 / 2.66
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 104.462, 104.462, 176.691, 90.00, 90.00, 120.00
R / Rfree (%) 25.1 / 30.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of SUVH5 Sra-Fully Methylated Cg Dna Complex in Space Group P6122 (pdb code 3q0c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of SUVH5 Sra-Fully Methylated Cg Dna Complex in Space Group P6122, PDB code: 3q0c:

Magnesium binding site 1 out of 1 in 3q0c

Go back to Magnesium Binding Sites List in 3q0c
Magnesium binding site 1 out of 1 in the Crystal Structure of SUVH5 Sra-Fully Methylated Cg Dna Complex in Space Group P6122


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of SUVH5 Sra-Fully Methylated Cg Dna Complex in Space Group P6122 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg12

b:15.5
occ:0.50
O B:HOH33 2.3 16.8 1.0
O B:HOH32 2.5 19.1 1.0
OP1 B:DT11 2.7 37.6 1.0
OP2 B:DT11 2.9 42.0 1.0
P B:DT11 3.2 29.4 1.0
O5' B:DT11 4.2 36.4 1.0
O3' B:DT10 4.5 35.3 1.0
C5' B:DT11 4.9 32.1 1.0

Reference:

E.Rajakumara, J.A.Law, D.K.Simanshu, P.Voigt, L.M.Johnson, D.Reinberg, D.J.Patel, S.E.Jacobsen. A Dual Flip-Out Mechanism For 5MC Recognition By the Arabidopsis SUVH5 Sra Domain and Its Impact on Dna Methylation and H3K9 Dimethylation in Vivo. Genes Dev. V. 25 137 2011.
ISSN: ISSN 0890-9369
PubMed: 21245167
DOI: 10.1101/GAD.1980311
Page generated: Thu Aug 15 09:51:33 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy