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Magnesium in PDB 3q0c: Crystal Structure of SUVH5 Sra-Fully Methylated Cg Dna Complex in Space Group P6122

Enzymatic activity of Crystal Structure of SUVH5 Sra-Fully Methylated Cg Dna Complex in Space Group P6122

All present enzymatic activity of Crystal Structure of SUVH5 Sra-Fully Methylated Cg Dna Complex in Space Group P6122:
2.1.1.43;

Protein crystallography data

The structure of Crystal Structure of SUVH5 Sra-Fully Methylated Cg Dna Complex in Space Group P6122, PDB code: 3q0c was solved by R.Eerappa, D.K.Simanshu, D.J.Patel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.85 / 2.66
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 104.462, 104.462, 176.691, 90.00, 90.00, 120.00
R / Rfree (%) 25.1 / 30.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of SUVH5 Sra-Fully Methylated Cg Dna Complex in Space Group P6122 (pdb code 3q0c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of SUVH5 Sra-Fully Methylated Cg Dna Complex in Space Group P6122, PDB code: 3q0c:

Magnesium binding site 1 out of 1 in 3q0c

Go back to Magnesium Binding Sites List in 3q0c
Magnesium binding site 1 out of 1 in the Crystal Structure of SUVH5 Sra-Fully Methylated Cg Dna Complex in Space Group P6122


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of SUVH5 Sra-Fully Methylated Cg Dna Complex in Space Group P6122 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg12

b:15.5
occ:0.50
O B:HOH33 2.3 16.8 1.0
O B:HOH32 2.5 19.1 1.0
OP1 B:DT11 2.7 37.6 1.0
OP2 B:DT11 2.9 42.0 1.0
P B:DT11 3.2 29.4 1.0
O5' B:DT11 4.2 36.4 1.0
O3' B:DT10 4.5 35.3 1.0
C5' B:DT11 4.9 32.1 1.0

Reference:

E.Rajakumara, J.A.Law, D.K.Simanshu, P.Voigt, L.M.Johnson, D.Reinberg, D.J.Patel, S.E.Jacobsen. A Dual Flip-Out Mechanism For 5MC Recognition By the Arabidopsis SUVH5 Sra Domain and Its Impact on Dna Methylation and H3K9 Dimethylation in Vivo. Genes Dev. V. 25 137 2011.
ISSN: ISSN 0890-9369
PubMed: 21245167
DOI: 10.1101/GAD.1980311
Page generated: Thu Aug 15 09:51:33 2024

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