Magnesium in PDB 3q5d: Crystal Structure of Human Atlastin-1 (Residues 1-447) Bound to Gdp, Crystal Form 1

The structure of Crystal Structure of Human Atlastin-1 (Residues 1-447) Bound to Gdp, Crystal Form 1, PDB code: 3q5d was solved by L.J.Byrnes, H.Sondermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.13 / 2.70
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	145.353, 145.353, 104.168, 90.00, 90.00, 120.00
R / Rfree (%)	18.8 / 25

The binding sites of Magnesium atom in the Crystal Structure of Human Atlastin-1 (Residues 1-447) Bound to Gdp, Crystal Form 1 (pdb code 3q5d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Human Atlastin-1 (Residues 1-447) Bound to Gdp, Crystal Form 1, PDB code: 3q5d:

Magnesium binding site 1 out of 1 in the Crystal Structure of Human Atlastin-1 (Residues 1-447) Bound to Gdp, Crystal Form 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Human Atlastin-1 (Residues 1-447) Bound to Gdp, Crystal Form 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg448 b:63.9 occ:1.00 OG A:SER81 2.5 73.5 1.0 O2B A:GDP3850 2.5 52.4 1.0 O3B A:GDP3850 3.4 60.1 1.0 OE2 A:GLU117 3.4 0.2 1.0 PB A:GDP3850 3.6 52.1 1.0 CB A:SER81 3.6 61.2 1.0 OE1 A:GLN148 3.9 56.9 1.0 OD1 A:ASP146 4.1 58.6 1.0 N A:SER81 4.3 43.6 1.0 CD A:GLU117 4.4 0.4 1.0 CA A:SER81 4.5 55.7 1.0 O1B A:GDP3850 4.5 60.1 1.0 O1A A:GDP3850 4.6 57.9 1.0 NZ A:LYS80 4.6 34.6 1.0 O3A A:GDP3850 4.7 66.6 1.0 CG A:ASP146 4.8 58.4 1.0 CE A:LYS80 4.9 50.5 1.0 CD A:GLN148 4.9 56.7 1.0

L.J.Byrnes, H.Sondermann. Structural Basis For the Nucleotide-Dependent Dimerization of the Large G Protein Atlastin-1/SPG3A. Proc.Natl.Acad.Sci.Usa V. 108 2216 2011.
ISSN: ISSN 0027-8424
PubMed: 21220294
DOI: 10.1073/PNAS.1012792108