Magnesium in PDB 3q9l: The Structure of the Dimeric E.Coli Mind-Atp Complex

The structure of The Structure of the Dimeric E.Coli Mind-Atp Complex, PDB code: 3q9l was solved by W.Wu, K.-T.Park, J.Lutkenhaus, T.Holyoak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.03 / 2.34
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	83.664, 86.595, 110.714, 90.00, 90.00, 90.00
R / Rfree (%)	26.6 / 30.7

The binding sites of Magnesium atom in the The Structure of the Dimeric E.Coli Mind-Atp Complex (pdb code 3q9l). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Structure of the Dimeric E.Coli Mind-Atp Complex, PDB code: 3q9l:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Structure of the Dimeric E.Coli Mind-Atp Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of the Dimeric E.Coli Mind-Atp Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg700 b:24.3 occ:1.00 O1G A:ATP800 2.2 38.2 1.0 O A:HOH263 2.2 24.8 1.0 O A:HOH261 2.2 29.5 1.0 OG1 A:THR17 2.3 23.2 1.0 O1B A:ATP800 2.3 23.3 1.0 O A:HOH262 2.3 30.2 1.0 PG A:ATP800 3.3 50.5 1.0 PB A:ATP800 3.4 19.6 1.0 CB A:THR17 3.4 26.4 1.0 O3B A:ATP800 3.4 27.1 1.0 O2G A:ATP800 3.8 37.8 1.0 N A:THR17 4.0 21.4 1.0 O1A A:ATP800 4.1 18.1 1.0 OD2 A:ASP120 4.2 23.8 1.0 O A:HOH284 4.2 31.5 1.0 CA A:THR17 4.3 20.5 1.0 ND2 A:ASN45 4.4 33.6 1.0 OD1 A:ASP120 4.4 30.3 1.0 O2B A:ATP800 4.4 24.0 1.0 O A:HOH305 4.5 41.1 1.0 CG2 A:THR17 4.5 20.0 1.0 O3A A:ATP800 4.5 22.6 1.0 O A:SER121 4.5 20.5 1.0 O3G A:ATP800 4.6 20.0 1.0 CE A:LYS16 4.6 26.6 1.0 PA A:ATP800 4.7 21.6 1.0 CB A:LYS16 4.7 20.5 1.0 CG A:ASP120 4.7 28.7 1.0 CB A:ASN45 4.8 29.3 1.0 O2A A:ATP800 4.9 18.8 1.0 C A:LYS16 5.0 26.2 1.0

Magnesium binding site 2 out of 2 in the The Structure of the Dimeric E.Coli Mind-Atp Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of the Dimeric E.Coli Mind-Atp Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg700 b:27.1 occ:1.00 O B:HOH263 2.2 23.1 1.0 O1G B:ATP800 2.2 33.0 1.0 OG1 B:THR17 2.3 24.8 1.0 O B:HOH262 2.3 33.1 1.0 O1B B:ATP800 2.3 25.9 1.0 O B:HOH261 2.3 29.9 1.0 PG B:ATP800 3.3 43.5 1.0 CB B:THR17 3.4 26.4 1.0 PB B:ATP800 3.5 16.6 1.0 O3B B:ATP800 3.5 26.9 1.0 O2G B:ATP800 3.9 40.4 1.0 N B:THR17 4.1 22.3 1.0 OD2 B:ASP120 4.2 22.1 1.0 O1A B:ATP800 4.2 26.2 1.0 O B:HOH331 4.2 30.3 1.0 ND2 B:ASN45 4.3 33.3 1.0 CA B:THR17 4.3 20.5 1.0 OD1 B:ASP120 4.4 30.1 1.0 O2B B:ATP800 4.4 22.4 1.0 O B:HOH301 4.5 45.9 1.0 CG2 B:THR17 4.5 19.5 1.0 O B:SER121 4.5 17.9 1.0 O3G B:ATP800 4.6 17.9 1.0 O3A B:ATP800 4.6 20.9 1.0 CE B:LYS16 4.6 25.9 1.0 CG B:ASP120 4.7 27.9 1.0 CB B:ASN45 4.8 29.8 1.0 CB B:LYS16 4.8 21.8 1.0 PA B:ATP800 4.8 25.1 1.0

W.Wu, K.T.Park, T.Holyoak, J.Lutkenhaus. Determination of the Structure of the Mind-Atp Complex Reveals the Orientation of Mind on the Membrane and the Relative Location of the Binding Sites For Mine and Minc. Mol.Microbiol. V. 79 1515 2011.
ISSN: ISSN 0950-382X
PubMed: 21231967
DOI: 10.1111/J.1365-2958.2010.07536.X