Magnesium in PDB 3qo8: Crystal Structure of Seryl-Trna Synthetase From Candida Albicans

All present enzymatic activity of Crystal Structure of Seryl-Trna Synthetase From Candida Albicans:
6.1.1.11;

The structure of Crystal Structure of Seryl-Trna Synthetase From Candida Albicans, PDB code: 3qo8 was solved by R.Rocha, M.A.Santos, P.J.B.Pereira, S.Macedo-Ribeiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	59.83 / 2.00
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	90.997, 90.997, 275.767, 90.00, 90.00, 120.00
R / Rfree (%)	18.1 / 20.6

The binding sites of Magnesium atom in the Crystal Structure of Seryl-Trna Synthetase From Candida Albicans (pdb code 3qo8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Seryl-Trna Synthetase From Candida Albicans, PDB code: 3qo8:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Seryl-Trna Synthetase From Candida Albicans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Seryl-Trna Synthetase From Candida Albicans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg487 b:29.1 occ:1.00 O2S A:SSA486 2.4 20.0 1.0 O A:HOH556 2.4 21.4 1.0 OG A:SER369 2.4 21.3 1.0 OE2 A:GLU366 2.4 21.9 1.0 O A:HOH743 2.5 59.6 1.0 O A:HOH719 2.6 42.4 1.0 CD A:GLU366 3.2 26.6 1.0 CB A:SER369 3.5 18.5 1.0 OE1 A:GLU366 3.5 32.9 1.0 O A:HOH562 3.7 40.7 1.0 S1 A:SSA486 3.7 20.8 1.0 NZ A:LYS351 4.1 47.5 1.0 O1S A:SSA486 4.2 18.9 1.0 OD2 A:ASP353 4.2 26.4 1.0 O A:HOH554 4.3 23.3 1.0 O A:HOH705 4.4 46.0 1.0 N8 A:SSA486 4.4 16.2 1.0 CG A:GLU366 4.4 22.9 1.0 OD1 A:ASP353 4.4 21.8 1.0 O3' A:SSA486 4.4 17.4 1.0 CE A:LYS351 4.5 30.0 1.0 CG A:ASP353 4.7 25.3 1.0 CA A:SER369 4.7 18.8 1.0 O5' A:SSA486 4.7 18.1 1.0 O A:HOH669 4.8 43.5 1.0 C3' A:SSA486 4.8 18.0 1.0 O A:HOH583 4.9 37.2 1.0 N A:SER369 5.0 17.3 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Seryl-Trna Synthetase From Candida Albicans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Seryl-Trna Synthetase From Candida Albicans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg489 b:48.6 occ:1.00 O A:LEU344 2.3 21.3 1.0 O A:HOH497 2.4 41.4 1.0 O A:HOH495 2.5 26.4 1.0 O A:HOH575 2.5 37.6 1.0 O A:HOH496 2.6 34.9 1.0 O A:HOH601 2.6 42.8 1.0 C A:LEU344 3.5 24.1 1.0 NH1 A:ARG25 4.0 24.5 1.0 CA A:ASN345 4.2 32.6 1.0 N A:ASN345 4.3 27.4 1.0 OD2 A:ASP27 4.3 39.5 1.0 O A:GLY342 4.4 37.7 1.0 N A:LEU344 4.4 25.9 1.0 O A:HOH729 4.5 53.6 1.0 C A:ASN345 4.5 33.0 1.0 CA A:LEU344 4.5 27.2 1.0 O A:HOH532 4.6 40.0 1.0 OD1 A:ASN346 4.6 36.5 1.0 O A:ARG25 4.7 36.2 1.0 OD1 A:ASP27 4.7 51.6 1.0 N A:ASN346 4.8 26.2 1.0 C A:GLU343 4.8 30.8 1.0 C A:GLY342 4.9 31.3 1.0 CG A:ASP27 4.9 44.0 1.0 O A:ASN345 5.0 26.3 1.0

R.Rocha, P.J.Pereira, M.A.Santos, S.Macedo-Ribeiro. Unveiling the Structural Basis For Translational Ambiguity Tolerance in A Human Fungal Pathogen. Proc.Natl.Acad.Sci.Usa V. 108 14091 2011.
ISSN: ISSN 0027-8424
PubMed: 21825144
DOI: 10.1073/PNAS.1102835108