Magnesium in PDB 3qy6: Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases

Enzymatic activity of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases

All present enzymatic activity of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases:
3.1.3.48;

Protein crystallography data

The structure of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases, PDB code: 3qy6 was solved by H.S.Kim, S.J.Lee, H.J.Yoon, D.R.An, D.J.Kim, S.-J.Kim, S.W.Suh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	20.00 / 1.80
*Space group*	P 1 2₁ 1
*Cell size a, b, c (Å), α, β, γ (°)*	36.624, 59.641, 57.530, 90.00, 101.08, 90.00
*R / R_free (%)*	21.6 / 25.6

Other elements in 3qy6:

The structure of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases also contains other interesting chemical elements:

Iron

(Fe)

2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases (pdb code 3qy6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases, PDB code: 3qy6:

Magnesium binding site 1 out of 1 in 3qy6

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Magnesium Binding Sites List in 3qy6

Magnesium binding site 1 out of 1 in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg265 b:38.0 occ:1.00	O	A:HOH405	1.6	47.2	1.0
	NE2	A:HIS42	2.0	41.7	1.0
	OD2	A:ASP14	2.2	36.7	0.5
	O	A:HOH376	2.2	35.3	1.0
	NE2	A:HIS196	2.3	33.8	1.0
	OD1	A:ASP14	2.7	34.7	0.5
	CG	A:ASP14	2.8	35.7	0.5
	CD2	A:HIS42	2.8	38.7	1.0
	CE1	A:HIS42	3.1	39.5	1.0
	CE1	A:HIS196	3.2	32.0	1.0
	CD2	A:HIS196	3.3	32.8	1.0
	O	A:HOH349	3.5	44.9	1.0
	CE1	A:HIS7	3.9	27.5	1.0
	NE2	A:HIS7	4.0	26.0	1.0
	CG	A:HIS42	4.0	36.9	1.0
	ND1	A:HIS42	4.1	40.6	1.0
	CB	A:ASP14	4.2	35.3	0.5
	CB	A:ASP14	4.2	35.9	0.5
	ND1	A:HIS7	4.3	27.5	1.0
	O	A:HOH347	4.3	32.6	1.0
	ND1	A:HIS196	4.3	30.9	1.0
	CD2	A:HIS7	4.3	25.6	1.0
	FE	A:FE264	4.3	25.5	1.0
	CG	A:HIS196	4.4	31.6	1.0
	CG	A:HIS7	4.5	26.3	1.0
	O	A:HOH348	4.5	30.0	1.0
	OD2	A:ASP14	4.7	38.1	0.5
	FE	A:FE263	4.9	30.3	1.0
	OE2	A:GLU80	4.9	29.5	1.0
	CG	A:ASP14	4.9	36.9	0.5
	NH2	A:ARG201	5.0	47.8	1.0

Reference:

H.S.Kim, S.J.Lee, H.J.Yoon, D.R.An, D.J.Kim, S.J.Kim, S.W.Suh. Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases. J.Struct.Biol. V. 175 442 2011.
ISSN: ISSN 1047-8477
PubMed: 21605684
DOI: 10.1016/J.JSB.2011.05.007

Page generated: Thu Aug 15 10:13:43 2024

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