Magnesium in PDB 3r4v: Structure of the Phage Tubulin Phuz-Gdp

The structure of Structure of the Phage Tubulin Phuz-Gdp, PDB code: 3r4v was solved by D.A.Agard, J.Pogliano, J.A.Kraemer, M.L.Erb, C.A.Waddling, E.A.Montabana, H.Wang, K.Nguyen, S.Pham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.40 / 1.67
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	47.065, 75.935, 92.798, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / 23.2

The binding sites of Magnesium atom in the Structure of the Phage Tubulin Phuz-Gdp (pdb code 3r4v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Phage Tubulin Phuz-Gdp, PDB code: 3r4v:

Magnesium binding site 1 out of 1 in the Structure of the Phage Tubulin Phuz-Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Phage Tubulin Phuz-Gdp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:31.1 occ:1.00 O A:HOH522 2.2 29.9 1.0 O1B A:GDP400 2.2 20.3 1.0 O A:HOH523 2.2 32.9 0.9 O A:HOH489 2.3 30.0 0.9 O A:HOH488 2.3 32.8 1.0 O A:HOH496 2.3 34.8 1.0 PB A:GDP400 3.4 24.9 1.0 O3B A:GDP400 3.6 22.7 1.0 O1A A:GDP400 4.0 26.0 1.0 N A:GLY12 4.0 27.8 1.0 O3A A:GDP400 4.1 22.5 1.0 O A:HOH475 4.2 48.8 1.0 OD2 A:ASP32 4.2 32.5 1.0 OD1 A:ASP32 4.2 35.7 1.0 OD1 A:ASN37 4.3 39.0 1.0 CA A:GLY12 4.4 30.4 1.0 O A:HOH502 4.5 50.0 1.0 SG A:CYS34 4.6 81.4 0.4 O2B A:GDP400 4.6 25.1 1.0 CG A:ASP32 4.7 39.4 1.0 PA A:GDP400 4.7 24.1 1.0 OG A:SER94 4.7 29.9 1.0 CB A:SER94 4.9 28.9 1.0

J.A.Kraemer, M.L.Erb, C.A.Waddling, E.A.Montabana, E.A.Zehr, H.Wang, K.Nguyen, D.S.Pham, D.A.Agard, J.Pogliano. A Phage Tubulin Assembles Dynamic Filaments By An Atypical Mechanism to Center Viral Dna Within the Host Cell. Cell(Cambridge,Mass.) V. 149 1488 2012.
ISSN: ISSN 0092-8674
PubMed: 22726436
DOI: 10.1016/J.CELL.2012.04.034