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Magnesium in PDB 3r5x: Crystal Structure of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed with Atp

Enzymatic activity of Crystal Structure of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed with Atp

All present enzymatic activity of Crystal Structure of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed with Atp:
6.3.2.4;

Protein crystallography data

The structure of Crystal Structure of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed with Atp, PDB code: 3r5x was solved by Y.Kim, R.Mulligan, J.Hasseman, W.F.Anderson, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.77 / 2.00
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 56.336, 68.992, 92.387, 73.36, 84.96, 75.46
R / Rfree (%) 17.7 / 22.1

Other elements in 3r5x:

The structure of Crystal Structure of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed with Atp also contains other interesting chemical elements:

Calcium (Ca) 7 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed with Atp (pdb code 3r5x). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed with Atp, PDB code: 3r5x:

Magnesium binding site 1 out of 1 in 3r5x

Go back to Magnesium Binding Sites List in 3r5x
Magnesium binding site 1 out of 1 in the Crystal Structure of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed with Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed with Atp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg404

b:60.6
occ:1.00
 O C:ARG299 2.3 53.9 1.0
O C:GLU302 2.6 70.5 1.0
O C:HOH643 2.6 72.0 1.0
O C:HOH644 2.7 55.0 1.0
O C:HOH645 2.8 60.3 1.0
C C:ARG299 3.4 52.4 1.0
C C:GLU302 3.6 72.1 1.0
CB C:GLU302 4.1 59.3 1.0
O C:LYS300 4.1 62.4 1.0
O C:HOH664 4.1 64.4 1.0
N C:PHE304 4.2 0.6 1.0
N C:LYS300 4.3 55.4 1.0
CA C:LYS300 4.3 57.4 1.0
CA C:GLU302 4.3 61.8 1.0
C C:LYS300 4.3 55.8 1.0
CA C:ARG299 4.4 43.8 1.0
N C:GLU302 4.4 51.8 1.0
OE2 C:GLU75 4.5 59.4 1.0
N C:GLY303 4.6 81.7 1.0
OE1 C:GLU75 4.6 50.0 1.0
CB C:PHE304 4.7 86.1 1.0
CA C:GLY303 4.7 96.9 1.0
CB C:ARG299 4.8 47.0 1.0
C C:GLY303 4.9 1.0 1.0
CA C:PHE304 4.9 99.7 1.0
CD C:GLU75 5.0 60.3 1.0

Reference:

Y.Kim, J.Hasseman, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of D-Alanine--D-Alanine Ligase From Bacillus Anthracis Complexed with Atp To Be Published.
Page generated: Thu Aug 15 10:18:20 2024

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