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Magnesium in PDB 3rra: Crystal Structure of Enolase PRK14017 (Target Efi-500653) From Ralstonia Pickettii 12J with Magnesium Bound

Enzymatic activity of Crystal Structure of Enolase PRK14017 (Target Efi-500653) From Ralstonia Pickettii 12J with Magnesium Bound

All present enzymatic activity of Crystal Structure of Enolase PRK14017 (Target Efi-500653) From Ralstonia Pickettii 12J with Magnesium Bound:
4.2.1.6;

Protein crystallography data

The structure of Crystal Structure of Enolase PRK14017 (Target Efi-500653) From Ralstonia Pickettii 12J with Magnesium Bound, PDB code: 3rra was solved by Y.Patskovsky, U.A.Ramagopal, B.Hillerich, R.D.Seidel, W.D.Zencheck, R.Toro, H.J.Imker, J.A.Gerlt, S.C.Almo, Enzyme Function Initiative (Efi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.30
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 117.339, 117.339, 113.685, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 26.3

Other elements in 3rra:

The structure of Crystal Structure of Enolase PRK14017 (Target Efi-500653) From Ralstonia Pickettii 12J with Magnesium Bound also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Enolase PRK14017 (Target Efi-500653) From Ralstonia Pickettii 12J with Magnesium Bound (pdb code 3rra). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Enolase PRK14017 (Target Efi-500653) From Ralstonia Pickettii 12J with Magnesium Bound, PDB code: 3rra:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3rra

Go back to Magnesium Binding Sites List in 3rra
Magnesium binding site 1 out of 2 in the Crystal Structure of Enolase PRK14017 (Target Efi-500653) From Ralstonia Pickettii 12J with Magnesium Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Enolase PRK14017 (Target Efi-500653) From Ralstonia Pickettii 12J with Magnesium Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg406

b:83.5
occ:1.00
 O A:HOH462 2.0 73.5 1.0
O A:HOH463 2.0 77.8 1.0
OE1 A:GLU209 2.2 75.4 1.0
OE2 A:GLU235 2.2 73.9 1.0
OD2 A:ASP183 2.2 73.8 1.0
CG A:ASP183 3.1 67.1 1.0
CD A:GLU235 3.2 80.4 1.0
OD1 A:ASP183 3.3 71.1 1.0
CD A:GLU209 3.3 76.9 1.0
OE1 A:GLU235 3.5 86.7 1.0
CG A:GLU209 3.9 72.5 1.0
O A:HOH438 3.9 70.5 1.0
ND1 A:HIS185 4.1 76.1 1.0
NZ A:LYS144 4.1 82.2 1.0
CE1 A:HIS185 4.2 61.1 1.0
OE1 A:GLU210 4.3 0.0 1.0
OE2 A:GLU209 4.3 74.8 1.0
CE1 A:HIS285 4.4 0.6 1.0
CG A:GLU235 4.4 62.0 1.0
CB A:ASP183 4.5 63.6 1.0
CD A:GLU210 4.6 98.9 1.0
CE A:LYS144 4.8 77.6 1.0
CG A:HIS185 4.9 72.1 1.0
CG A:GLU210 4.9 81.2 1.0

Magnesium binding site 2 out of 2 in 3rra

Go back to Magnesium Binding Sites List in 3rra
Magnesium binding site 2 out of 2 in the Crystal Structure of Enolase PRK14017 (Target Efi-500653) From Ralstonia Pickettii 12J with Magnesium Bound


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Enolase PRK14017 (Target Efi-500653) From Ralstonia Pickettii 12J with Magnesium Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg406

b:96.0
occ:1.00
 O B:HOH480 2.0 98.2 1.0
OD2 B:ASP183 2.1 55.4 1.0
OE1 B:GLU209 2.1 77.4 1.0
OE1 B:GLU235 2.2 74.0 1.0
O B:HOH481 2.2 94.2 1.0
CG B:ASP183 3.1 62.3 1.0
CD B:GLU235 3.2 79.1 1.0
CD B:GLU209 3.3 53.1 1.0
OD1 B:ASP183 3.5 59.3 1.0
NZ B:LYS144 3.6 83.0 1.0
OE2 B:GLU235 3.6 77.5 1.0
OE1 B:GLU384 3.9 0.5 1.0
OE2 B:GLU209 4.1 68.7 1.0
CG B:GLU209 4.1 58.6 1.0
CE B:LYS144 4.2 77.2 1.0
O B:HOH441 4.3 59.6 1.0
CB B:ASP183 4.3 52.9 1.0
ND1 B:HIS185 4.4 55.5 1.0
CE1 B:HIS285 4.4 97.8 1.0
CG B:GLU235 4.5 58.0 1.0
CE1 B:HIS185 4.6 61.2 1.0
ND1 B:HIS285 4.6 98.1 1.0
O B:HOH473 4.6 92.8 1.0
CD B:GLU384 4.7 0.2 1.0

Reference:

Y.Patskovsky, U.A.Ramagopal, B.Hillerich, R.D.Seidel, W.D.Zencheck, R.Toro, H.J.Imker, J.A.Gerlt, S.C.Almo. Crystal Structure of Enolase PRK14017 From Ralstonia Pickettii To Be Published.
Page generated: Mon Dec 14 08:45:49 2020

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