Atomistry » Magnesium » PDB 3rr7-3rv6 » 3rry
Atomistry »
  Magnesium »
    PDB 3rr7-3rv6 »
      3rry »

Magnesium in PDB 3rry: H-Ras Crosslinked Control, Soaked in Aqueous Solution: One of 10 in Mscs Set

Protein crystallography data

The structure of H-Ras Crosslinked Control, Soaked in Aqueous Solution: One of 10 in Mscs Set, PDB code: 3rry was solved by C.Mattos, G.Buhrman, B.Kearney, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.68 / 1.60
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 88.726, 88.726, 135.051, 90.00, 90.00, 120.00
R / Rfree (%) 18.5 / 20.1

Other elements in 3rry:

The structure of H-Ras Crosslinked Control, Soaked in Aqueous Solution: One of 10 in Mscs Set also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the H-Ras Crosslinked Control, Soaked in Aqueous Solution: One of 10 in Mscs Set (pdb code 3rry). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the H-Ras Crosslinked Control, Soaked in Aqueous Solution: One of 10 in Mscs Set, PDB code: 3rry:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3rry

Go back to Magnesium Binding Sites List in 3rry
Magnesium binding site 1 out of 2 in the H-Ras Crosslinked Control, Soaked in Aqueous Solution: One of 10 in Mscs Set


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of H-Ras Crosslinked Control, Soaked in Aqueous Solution: One of 10 in Mscs Set within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg192

b:22.7
occ:1.00
O2G A:GNP190 2.1 23.8 1.0
O2B A:GNP190 2.1 21.2 1.0
O A:HOH303 2.1 23.5 1.0
OG1 A:THR35 2.1 25.1 1.0
OG A:SER17 2.2 21.2 1.0
O A:HOH301 2.2 22.7 0.9
CB A:THR35 3.1 23.5 1.0
CB A:SER17 3.2 23.1 1.0
PG A:GNP190 3.2 23.0 1.0
PB A:GNP190 3.2 21.3 1.0
N3B A:GNP190 3.3 21.0 1.0
N A:THR35 3.8 24.6 1.0
N A:SER17 3.9 20.2 1.0
OD2 A:ASP57 4.0 24.4 1.0
CA A:THR35 4.1 23.7 1.0
O A:HOH348 4.1 24.8 1.0
CA A:SER17 4.1 21.7 1.0
O3G A:GNP190 4.1 24.1 1.0
CG2 A:THR35 4.1 23.7 1.0
O2A A:GNP190 4.2 22.8 1.0
OD1 A:ASP57 4.2 24.0 1.0
O3A A:GNP190 4.2 21.5 1.0
O1B A:GNP190 4.3 20.3 1.0
O1G A:GNP190 4.4 24.7 1.0
O A:ASP33 4.4 23.9 1.0
CG A:ASP57 4.5 23.6 1.0
O A:THR58 4.5 26.1 1.0
PA A:GNP190 4.5 21.7 1.0
O1A A:GNP190 4.7 21.4 1.0
C A:PRO34 4.7 25.7 1.0
CB A:LYS16 4.8 19.0 1.0
C A:LYS16 4.9 21.3 1.0
CA A:PRO34 5.0 22.1 1.0

Magnesium binding site 2 out of 2 in 3rry

Go back to Magnesium Binding Sites List in 3rry
Magnesium binding site 2 out of 2 in the H-Ras Crosslinked Control, Soaked in Aqueous Solution: One of 10 in Mscs Set


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of H-Ras Crosslinked Control, Soaked in Aqueous Solution: One of 10 in Mscs Set within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg194

b:37.9
occ:0.46
O A:HOH364 2.7 40.6 0.9
O A:HOH342 2.7 38.7 1.0
O A:HOH432 3.0 37.3 0.3
OE1 A:GLN129 4.3 37.0 1.0
O A:THR124 4.4 27.6 1.0
O A:HOH338 4.5 36.4 0.9
CD A:GLN129 4.8 39.4 1.0
NE2 A:GLN129 4.8 38.1 1.0

Reference:

G.Buhrman, C.O Connor, B.Zerbe, B.M.Kearney, R.Napoleon, E.A.Kovrigina, S.Vajda, D.Kozakov, E.L.Kovrigin, C.Mattos. Analysis of Binding Site Hot Spots on the Surface of Ras Gtpase. J.Mol.Biol. V. 413 773 2011.
ISSN: ISSN 0022-2836
PubMed: 21945529
DOI: 10.1016/J.JMB.2011.09.011
Page generated: Thu Aug 15 10:36:50 2024

Last articles

Cl in 2VR2
Cl in 2VR1
Cl in 2VQB
Cl in 2VPY
Cl in 2VQ7
Cl in 2VQ9
Cl in 2VQ5
Cl in 2VQ8
Cl in 2VQ2
Cl in 2VPM
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy