Atomistry » Magnesium » PDB 3rr5-3rv4 » 3rs4
Atomistry »
  Magnesium »
    PDB 3rr5-3rv4 »
      3rs4 »

Magnesium in PDB 3rs4: H-Ras Soaked in 60% 1,6-Hexanediol: 1 of 10 in Mscs Set

Protein crystallography data

The structure of H-Ras Soaked in 60% 1,6-Hexanediol: 1 of 10 in Mscs Set, PDB code: 3rs4 was solved by C.Mattos, G.Buhrman, B.Kearney, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.03 / 1.70
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 88.792, 88.792, 135.093, 90.00, 90.00, 120.00
R / Rfree (%) 17.2 / 19.8

Other elements in 3rs4:

The structure of H-Ras Soaked in 60% 1,6-Hexanediol: 1 of 10 in Mscs Set also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the H-Ras Soaked in 60% 1,6-Hexanediol: 1 of 10 in Mscs Set (pdb code 3rs4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the H-Ras Soaked in 60% 1,6-Hexanediol: 1 of 10 in Mscs Set, PDB code: 3rs4:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 3rs4

Go back to Magnesium Binding Sites List in 3rs4
Magnesium binding site 1 out of 2 in the H-Ras Soaked in 60% 1,6-Hexanediol: 1 of 10 in Mscs Set


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of H-Ras Soaked in 60% 1,6-Hexanediol: 1 of 10 in Mscs Set within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg192

b:15.4
occ:1.00
O2G A:GNP190 2.1 17.1 1.0
O2B A:GNP190 2.1 12.8 1.0
O A:HOH303 2.2 15.6 1.0
OG A:SER17 2.2 13.0 1.0
OG1 A:THR35 2.2 15.9 1.0
O A:HOH301 2.3 17.6 1.0
CB A:THR35 3.1 17.6 1.0
CB A:SER17 3.2 13.9 1.0
PG A:GNP190 3.2 15.9 1.0
PB A:GNP190 3.3 14.7 1.0
N3B A:GNP190 3.4 15.0 1.0
N A:THR35 3.9 17.5 1.0
N A:SER17 3.9 12.3 1.0
OD2 A:ASP57 4.0 22.4 1.0
O3G A:GNP190 4.1 20.2 1.0
CA A:THR35 4.1 19.2 1.0
O A:HOH348 4.1 25.0 1.0
CA A:SER17 4.1 13.3 1.0
O2A A:GNP190 4.2 17.4 1.0
CG2 A:THR35 4.2 16.1 1.0
OD1 A:ASP57 4.2 21.3 1.0
O3A A:GNP190 4.3 12.4 1.0
O1B A:GNP190 4.3 13.9 1.0
O1G A:GNP190 4.4 16.8 1.0
O A:ASP33 4.5 16.7 1.0
CG A:ASP57 4.5 18.7 1.0
PA A:GNP190 4.5 14.1 1.0
O A:THR58 4.6 17.8 1.0
O1A A:GNP190 4.7 12.7 1.0
C A:PRO34 4.8 19.6 1.0
CB A:LYS16 4.9 12.8 1.0
C A:LYS16 5.0 13.4 1.0
CE A:LYS16 5.0 15.1 1.0

Magnesium binding site 2 out of 2 in 3rs4

Go back to Magnesium Binding Sites List in 3rs4
Magnesium binding site 2 out of 2 in the H-Ras Soaked in 60% 1,6-Hexanediol: 1 of 10 in Mscs Set


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of H-Ras Soaked in 60% 1,6-Hexanediol: 1 of 10 in Mscs Set within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg194

b:22.3
occ:0.34
O A:HOH364 2.6 36.5 1.0
O A:HOH342 2.7 28.6 1.0
OE1 A:GLN129 4.3 27.3 1.0
O A:THR124 4.3 16.9 1.0
O A:HOH453 4.4 38.5 1.0
O A:HOH338 4.6 31.3 1.0
CD A:GLN129 4.8 30.5 1.0
NE2 A:GLN129 4.9 27.0 1.0

Reference:

G.Buhrman, C.O Connor, B.Zerbe, B.M.Kearney, R.Napoleon, E.A.Kovrigina, S.Vajda, D.Kozakov, E.L.Kovrigin, C.Mattos. Analysis of Binding Site Hot Spots on the Surface of Ras Gtpase. J.Mol.Biol. V. 413 773 2011.
ISSN: ISSN 0022-2836
PubMed: 21945529
DOI: 10.1016/J.JMB.2011.09.011
Page generated: Mon Dec 14 08:46:01 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy