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Magnesium in PDB 3rsg: Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nad.

Enzymatic activity of Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nad.

All present enzymatic activity of Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nad.:
4.2.1.93;

Protein crystallography data

The structure of Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nad., PDB code: 3rsg was solved by I.A.Shumilin, M.Cymborowski, S.A.Lesley, W.Minor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.10
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 122.168, 122.168, 155.108, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 21.4

Other elements in 3rsg:

The structure of Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nad. also contains other interesting chemical elements:

Potassium (K) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nad. (pdb code 3rsg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nad., PDB code: 3rsg:

Magnesium binding site 1 out of 1 in 3rsg

Go back to Magnesium Binding Sites List in 3rsg
Magnesium binding site 1 out of 1 in the Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nad.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of TM0922, A Fusion of A Domain of Unknown Function and Adp/Atp-Dependent Nad(P)H-Hydrate Dehydratase From Thermotoga Maritima Soaked with Nad. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg492

b:64.2
occ:1.00
O2A A:APR494 2.0 73.2 1.0
O A:HOH536 2.4 46.5 1.0
O1D A:APR494 2.4 82.7 1.0
O A:HOH547 2.4 51.0 1.0
O5D A:APR494 2.5 77.9 1.0
O4D A:APR494 2.9 84.9 1.0
C1D A:APR494 3.1 85.6 1.0
C5D A:APR494 3.3 82.1 1.0
PA A:APR494 3.3 70.9 1.0
C4D A:APR494 3.5 85.2 1.0
PB A:APR494 3.7 72.7 1.0
NZ A:LYS402 3.7 45.2 1.0
O3A A:APR494 3.8 76.6 1.0
C3D A:APR494 4.1 86.8 1.0
OD1 A:ASP342 4.1 41.4 1.0
OE2 A:GLU369 4.1 39.0 1.0
O2B A:APR494 4.2 73.3 1.0
C2D A:APR494 4.2 86.6 1.0
CD2 A:HIS366 4.3 34.5 1.0
O1A A:APR494 4.3 78.0 1.0
OD2 A:ASP342 4.3 37.9 1.0
O5' A:APR494 4.3 75.6 1.0
OE1 A:GLU369 4.4 35.6 1.0
CA A:GLY430 4.4 33.0 1.0
CB A:ALA343 4.5 37.1 1.0
CE A:LYS402 4.6 44.7 1.0
CG A:ASP342 4.6 37.7 1.0
OD1 A:ASP431 4.7 39.0 1.0
CD A:GLU369 4.7 37.1 1.0
CA A:ALA343 4.8 36.8 1.0
C A:GLY430 4.8 33.8 1.0
O1B A:APR494 4.8 74.2 1.0
O A:HOH532 4.8 51.5 1.0
NE2 A:HIS366 4.9 35.6 1.0

Reference:

I.A.Shumilin, M.Cymborowski, O.Chertihin, K.N.Jha, J.C.Herr, S.A.Lesley, A.Joachimiak, W.Minor. Identification of Unknown Protein Function Using Metabolite Cocktail Screening. Structure V. 20 1715 2012.
ISSN: ISSN 0969-2126
PubMed: 22940582
DOI: 10.1016/J.STR.2012.07.016
Page generated: Mon Dec 14 08:46:05 2020

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