Magnesium in PDB 3ryt: The Plexin A1 Intracellular Region in Complex with RAC1

The structure of The Plexin A1 Intracellular Region in Complex with RAC1, PDB code: 3ryt was solved by X.Zhang, H.He, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.54 / 3.58
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	110.783, 110.783, 265.628, 90.00, 90.00, 90.00
R / Rfree (%)	27 / 34

The binding sites of Magnesium atom in the The Plexin A1 Intracellular Region in Complex with RAC1 (pdb code 3ryt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Plexin A1 Intracellular Region in Complex with RAC1, PDB code: 3ryt:

Magnesium binding site 1 out of 1 in the The Plexin A1 Intracellular Region in Complex with RAC1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Plexin A1 Intracellular Region in Complex with RAC1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg178 b:0.8 occ:1.00 O2B C:GNP179 2.8 1.0 1.0 OD1 C:ASP57 2.9 0.5 1.0 OG1 C:THR17 2.9 0.9 1.0 O1G C:GNP179 2.9 0.0 1.0 O2G C:GNP179 2.9 0.1 1.0 OG1 C:THR35 3.1 85.3 0.5 OD2 C:ASP57 3.2 0.3 1.0 O C:THR58 3.2 0.7 1.0 CB C:THR35 3.3 84.8 0.5 PG C:GNP179 3.4 0.6 1.0 CG C:ASP57 3.4 0.1 1.0 PB C:GNP179 3.7 0.6 1.0 CE C:LYS16 3.9 0.6 1.0 O1B C:GNP179 3.9 0.3 1.0 N C:THR17 4.0 0.6 1.0 CB C:LYS16 4.0 0.3 1.0 N3B C:GNP179 4.0 0.1 1.0 NZ C:LYS16 4.1 0.1 1.0 CB C:THR17 4.2 0.3 1.0 CG2 C:THR35 4.2 90.2 0.5 C C:THR58 4.3 0.8 1.0 CA C:THR35 4.5 96.0 0.5 N C:THR35 4.5 92.8 0.5 CA C:THR17 4.5 0.1 1.0 C C:LYS16 4.6 0.6 1.0 O3G C:GNP179 4.7 0.6 1.0 CA C:LYS16 4.8 0.8 1.0 CB C:ASP57 4.9 0.3 1.0 N C:THR58 4.9 0.5 1.0 CA C:ALA59 4.9 0.2 1.0

Y.Wang, H.He, N.Srivastava, S.Vikarunnessa, Y.B.Chen, J.Jiang, C.W.Cowan, X.Zhang. Plexins Are Gtpase-Activating Proteins For Rap and Are Activated By Induced Dimerization. Sci.Signal. V. 5 RA6 2012.
ISSN: ESSN 1937-9145
PubMed: 22253263
DOI: 10.1126/SCISIGNAL.2002636