Magnesium in PDB 3s5b: Crystal Structure of Ced-3 Protease Suppressor-6 (Cps-6) From Caenorhabditis Elegans

The structure of Crystal Structure of Ced-3 Protease Suppressor-6 (Cps-6) From Caenorhabditis Elegans, PDB code: 3s5b was solved by H.S.Yuan, J.L.J.Lin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.59 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	69.221, 45.379, 80.310, 90.00, 104.17, 90.00
R / Rfree (%)	16.6 / 21

The binding sites of Magnesium atom in the Crystal Structure of Ced-3 Protease Suppressor-6 (Cps-6) From Caenorhabditis Elegans (pdb code 3s5b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Ced-3 Protease Suppressor-6 (Cps-6) From Caenorhabditis Elegans, PDB code: 3s5b:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Ced-3 Protease Suppressor-6 (Cps-6) From Caenorhabditis Elegans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Ced-3 Protease Suppressor-6 (Cps-6) From Caenorhabditis Elegans within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1 b:16.0 occ:1.00 OD1 A:ASN180 2.3 15.2 1.0 O A:HOH321 2.5 12.6 1.0 O A:HOH335 2.5 10.8 1.0 O A:HOH310 2.5 17.8 1.0 O A:HOH38 2.5 14.1 1.0 O A:HOH380 3.2 33.2 1.0 CG A:ASN180 3.5 18.6 1.0 N A:HIS148 3.8 8.9 1.0 O A:HOH436 4.0 12.8 1.0 O A:HOH415 4.0 22.5 1.0 OE2 A:GLU188 4.1 13.6 1.0 O A:HIS148 4.1 11.5 1.0 ND2 A:ASN180 4.1 16.7 1.0 O A:ASN180 4.3 14.2 1.0 OE1 A:GLU188 4.4 10.1 1.0 CA A:GLY147 4.4 7.5 1.0 OE1 A:GLN174 4.4 11.4 1.0 C A:GLY147 4.5 10.0 1.0 CD1 A:TRP184 4.6 10.4 1.0 CD A:GLU188 4.6 14.5 1.0 CA A:HIS148 4.7 11.9 1.0 O A:HOH349 4.7 28.9 1.0 CB A:ASN180 4.7 12.4 1.0 CB A:HIS148 4.7 9.2 1.0 O A:HOH448 4.7 18.6 1.0 C A:HIS148 4.8 11.8 1.0 C A:ASN180 4.9 16.0 1.0 CA A:ASN180 4.9 14.1 1.0 NE1 A:TRP184 4.9 12.1 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Ced-3 Protease Suppressor-6 (Cps-6) From Caenorhabditis Elegans


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Ced-3 Protease Suppressor-6 (Cps-6) From Caenorhabditis Elegans within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1 b:12.2 occ:1.00 OD1 B:ASN180 2.3 10.3 1.0 O B:HOH29 2.5 9.0 1.0 O B:HOH334 2.5 14.5 1.0 O B:HOH15 2.5 11.0 1.0 O B:HOH402 2.5 9.6 1.0 O B:HOH412 2.8 27.6 1.0 CG B:ASN180 3.4 11.0 1.0 OE2 B:GLU188 3.9 10.4 1.0 N B:HIS148 3.9 7.1 1.0 O B:HOH306 4.0 9.4 1.0 ND2 B:ASN180 4.1 9.0 1.0 O B:HIS148 4.1 7.2 1.0 O B:ASN180 4.3 12.5 1.0 OE1 B:GLN174 4.3 8.1 1.0 OE1 B:GLU188 4.3 8.3 1.0 O B:HOH363 4.4 14.6 1.0 CA B:GLY147 4.4 5.8 1.0 CD1 B:TRP184 4.5 5.1 1.0 CD B:GLU188 4.5 8.5 1.0 C B:GLY147 4.6 3.0 1.0 CB B:ASN180 4.6 6.1 1.0 O B:HOH375 4.7 10.6 1.0 CA B:HIS148 4.7 4.9 1.0 CB B:HIS148 4.8 5.6 1.0 CA B:ASN180 4.8 7.4 1.0 C B:ASN180 4.9 13.2 1.0 C B:HIS148 4.9 8.2 1.0 NE1 B:TRP184 5.0 6.3 1.0

J.L.J.Lin, A.Nakagawa, C.L.Lin, Y.Y.Hsiao, W.Z.Yang, Y.T.Wang, L.G.Doudeva, R.R.Skeen-Gaar, D.Xue, H.S.Yuan. Structural Insights Into Apoptotic Dna Degradation By Ced-3 Protease Suppressor-6 (Cps-6) From Caenorhabditis Elegans J.Biol.Chem. V. 287 7110 2012.
ISSN: ISSN 0021-9258
PubMed: 22223640
DOI: 10.1074/JBC.M111.316075