Atomistry » Magnesium » PDB 3si6-3sqx » 3sjd
Atomistry »
  Magnesium »
    PDB 3si6-3sqx »
      3sjd »

Magnesium in PDB 3sjd: Crystal Structure of S. Cerevisiae GET3 with Bound Adp-MG2+ in Complex with GET2 Cytosolic Domain

Protein crystallography data

The structure of Crystal Structure of S. Cerevisiae GET3 with Bound Adp-MG2+ in Complex with GET2 Cytosolic Domain, PDB code: 3sjd was solved by S.Reitz, K.Wild, I.Sinning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.23 / 4.60
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 149.640, 209.750, 133.240, 90.00, 90.00, 90.00
R / Rfree (%) 32.3 / 38.8

Other elements in 3sjd:

The structure of Crystal Structure of S. Cerevisiae GET3 with Bound Adp-MG2+ in Complex with GET2 Cytosolic Domain also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of S. Cerevisiae GET3 with Bound Adp-MG2+ in Complex with GET2 Cytosolic Domain (pdb code 3sjd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of S. Cerevisiae GET3 with Bound Adp-MG2+ in Complex with GET2 Cytosolic Domain, PDB code: 3sjd:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 3sjd

Go back to Magnesium Binding Sites List in 3sjd
Magnesium binding site 1 out of 3 in the Crystal Structure of S. Cerevisiae GET3 with Bound Adp-MG2+ in Complex with GET2 Cytosolic Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of S. Cerevisiae GET3 with Bound Adp-MG2+ in Complex with GET2 Cytosolic Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:0.1
occ:1.00
OG1 A:THR32 2.0 0.8 1.0
O2B A:ADP401 2.1 0.0 1.0
CG2 A:THR32 2.3 0.6 1.0
CB A:THR32 2.5 0.2 1.0
ND2 A:ASN61 2.9 0.9 1.0
CA A:THR32 3.2 0.5 1.0
PB A:ADP401 3.4 0.5 1.0
O1B A:ADP401 3.5 0.1 1.0
N A:THR32 3.6 0.9 1.0
NZ A:LYS31 3.7 0.7 1.0
CE A:LYS31 3.8 0.5 1.0
OD2 A:ASP166 3.9 0.7 1.0
CG A:ASN61 3.9 0.8 1.0
O2A A:ADP401 4.2 0.1 1.0
CB A:ASN61 4.3 0.7 1.0
O3A A:ADP401 4.3 0.0 1.0
O3B A:ADP401 4.4 0.1 1.0
OD1 A:ASP166 4.5 0.0 1.0
OD2 A:ASP57 4.6 0.7 1.0
C A:THR32 4.6 0.5 1.0
C A:LYS31 4.7 0.3 1.0
CG A:ASP166 4.7 0.2 1.0
PA A:ADP401 4.7 0.6 1.0
O1A A:ADP401 4.8 0.8 1.0
OD1 A:ASN61 5.0 0.9 1.0

Magnesium binding site 2 out of 3 in 3sjd

Go back to Magnesium Binding Sites List in 3sjd
Magnesium binding site 2 out of 3 in the Crystal Structure of S. Cerevisiae GET3 with Bound Adp-MG2+ in Complex with GET2 Cytosolic Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of S. Cerevisiae GET3 with Bound Adp-MG2+ in Complex with GET2 Cytosolic Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:0.6
occ:1.00
O2B B:ADP401 2.1 0.5 1.0
OG1 B:THR32 2.2 0.5 1.0
CG2 B:THR32 2.4 0.2 1.0
CB B:THR32 2.6 0.3 1.0
ND2 B:ASN61 2.8 0.3 1.0
CA B:THR32 3.3 0.9 1.0
O1B B:ADP401 3.3 0.1 1.0
PB B:ADP401 3.4 0.5 1.0
NZ B:LYS31 3.7 0.5 1.0
N B:THR32 3.7 0.5 1.0
CE B:LYS31 3.9 0.1 1.0
OD2 B:ASP166 3.9 0.3 1.0
CG B:ASN61 3.9 0.4 1.0
O2A B:ADP401 4.2 0.8 1.0
O3A B:ADP401 4.2 0.7 1.0
CB B:ASN61 4.2 0.3 1.0
O3B B:ADP401 4.3 0.6 1.0
OD2 B:ASP57 4.6 0.8 1.0
OD1 B:ASP166 4.6 0.5 1.0
PA B:ADP401 4.7 0.7 1.0
CG B:ASP166 4.7 0.6 1.0
C B:THR32 4.7 0.2 1.0
C B:LYS31 4.8 0.3 1.0
O1A B:ADP401 4.9 0.1 1.0
OD1 B:ASN61 5.0 0.5 1.0

Magnesium binding site 3 out of 3 in 3sjd

Go back to Magnesium Binding Sites List in 3sjd
Magnesium binding site 3 out of 3 in the Crystal Structure of S. Cerevisiae GET3 with Bound Adp-MG2+ in Complex with GET2 Cytosolic Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of S. Cerevisiae GET3 with Bound Adp-MG2+ in Complex with GET2 Cytosolic Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:0.6
occ:1.00
O2B C:ADP401 2.1 0.3 1.0
OG1 C:THR32 2.2 0.5 1.0
CG2 C:THR32 2.4 0.4 1.0
CB C:THR32 2.6 0.7 1.0
ND2 C:ASN61 2.9 0.0 1.0
CA C:THR32 3.3 0.9 1.0
PB C:ADP401 3.4 0.0 1.0
O1B C:ADP401 3.4 0.7 1.0
NZ C:LYS31 3.6 0.4 1.0
N C:THR32 3.7 0.5 1.0
CE C:LYS31 3.8 0.3 1.0
OD2 C:ASP166 3.9 0.7 1.0
CG C:ASN61 4.0 0.2 1.0
O2A C:ADP401 4.2 0.1 1.0
O3A C:ADP401 4.3 0.2 1.0
CB C:ASN61 4.3 0.0 1.0
O3B C:ADP401 4.3 0.5 1.0
OD2 C:ASP57 4.6 0.8 1.0
OD1 C:ASP166 4.6 0.2 1.0
PA C:ADP401 4.7 0.5 1.0
C C:THR32 4.7 0.4 1.0
C C:LYS31 4.7 0.2 1.0
CG C:ASP166 4.7 0.3 1.0
O1A C:ADP401 4.8 0.4 1.0

Reference:

S.Stefer, S.Reitz, F.Wang, K.Wild, Y.Y.Pang, D.Schwarz, J.Bomke, C.Hein, F.Lohr, F.Bernhard, V.Denic, V.Dotsch, I.Sinning. Structural Basis For Tail-Anchored Membrane Protein Biogenesis By the GET3-Receptor Complex. Science V. 333 758 2011.
ISSN: ISSN 0036-8075
PubMed: 21719644
DOI: 10.1126/SCIENCE.1207125
Page generated: Mon Dec 14 08:51:10 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy